CuGenDBv2

Gene ID	Spg028207
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Genome location	scaffold2:42475967..42483738
RNA-Seq Expression	Spg028207
Synteny	Spg028207
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-54

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

5.0e-55

67.28

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-54

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-55

67.9

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Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RWKWF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

KAA0065893.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-54

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        L+ILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

5.4e-55

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

A0A5A7TXW1 Retrotransposon protein

5.4e-55

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLH+ L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

A0A5A7U476 Retrotransposon protein

1.1e-55

67.9

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RWKWF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

A0A5A7VCK9 Retrotransposon protein

1.2e-54

66.67

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        L+ILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

A0A5D3BDX0 Retrotransposon protein

2.4e-55

67.28

Show/hide

Query:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF
        +DEHEL +I  AF  +Q Q+ L+L+L  ND +RI H     RH IR L +FR+IH SDL CR+STRMDRRCFAILC LLRT+AGLT TEVVDVEEMVAMF
Subjt:  LDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMF

Query:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ
        LHILAHDVKNRV++ +F RSGET+SRHFN VL  V+RLHE L+KKP+PV   CTD RW+WF+
Subjt:  LHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

7.2e-12

38.64

Show/hide

Query:  FRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRL
        +++++  + +C E+ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R V+  F  SGET+SRHFN VL+ V+ +
Subjt:  FRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARSGETVSRHFNTVLHGVLRL

Sequences

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CDS sequence

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ATGGATCCCGATGATCTAGATGAGCATGAACTAGTGGCCATATTCACAGCCTTCACCACAGCGCAAGCTCAGATTTTCCTACTCTTAGATCTATATATGAACGATTATAG
AAGAATAGAACACCAATCACCCTACCTCCGACACCACATTAGGCATCTAACATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGAGTACAAGGATGGACA
GAAGATGTTTTGCCATACTTTGCACCTTGTTAAGAACAGTTGCCGGCTTAACTGGAACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCC
CACGACGTTAAGAACCGAGTAGTTCGTACACAGTTTGCTAGGTCTGGGGAGACAGTTTCTAGGCACTTCAACACCGTCCTTCATGGGGTGTTACGACTGCATGAAGTTCT
TATAAAAAAACCTGAGCCAGTCACGACCTCTTGTACGGATCCGAGGTGGAAATGGTTTCAGGAGAATTATAATTCTCAAAATCAAGAAAAGTTTCACAGAGTAGAAAAAG
AAAAATGTTATGGATCCTCCTTATGCTTGATGGCTCATTCGGATAATGATTATGGTGATGATAGTGATGAAAATGAGGTAAATCACAAATCTCGTACTTATGATGAACTT
TATGATGCTTTTGAAAGTATGCATCAAGATTTAGAAAAACTTGGTTCAAAATATGTGAAATTATCAAAGAAGTATAAGACATTGTCTATTGAGAATAAATCTTTGATAAA
TGAAAATGCATGTTTGAAAAATGGAGCTAATAATGTTTTGTTGCATAATGAGGTTGATAGTGATTGTGATGAGAAAAATGTTAAGGTTAATAGAATTAAATTTCTTGAGA
AAGAGAATGAGGATCTCAAATCTTTATCTTGTGAATTGAAACTTGAATTGAATGATTTGAGAAACAATAATGAAAAAATTGAATCTTTTTCATTAGAATTGAAAGATGAA
ATTGCTAGTTTGAAAAATAAAATTATTGATTTGGAAACTAGCAATACTTCTTTAGAGAATGATAAACTTGCCTTGATTGACAAGATTAAATTCATTGAATGTGATAGTCA
TGAGAAAAATGATCTTTTGCATGTGCTTAAAGAAAAAGAATTGTTAGCTAATAAAGAGCTTGAAATTGCAAAAGAGTCTATTAAGAAATTGACTATAGGTGCACAAAAAT
TAGATAAAATTATTGACATGGGTAAACCTTTTAATGACAAAAGGGGATTAGGCTATGTGGATGAAAATTCTTCATCTAATTCTAAGACTATTTTTGTTAAAGCTACTCCT
AGTATGCCTAAAAATATTTTACCCAATGTGTCCAATTTTGTTGAATCTAAATTTGTGCCAAGGGATGAGAAATCTAGACCTATGCATGAAAAATCAAAATTTGTTCCTAA
ACATGTTGATGAAAAATTCAAATGTTTGCATATTGCTAAATTTGGGCCTAGACATAAAAAGGCTAAAAATGTGGATGTAAAATCAAAATTTGTGCCTAGATGTCATTTTT
GTGGAGTTAAAGTCGAAGGTTTAATTCTTTTGCTCATAATCTTGCCCGTGTGGGCAAATCATGTTCGACGCCAGCCTTGTGGCTTCAGAACTATCCTCAATGGATGCAAA
AGAATCAAGATCATGCTCTTGGTGGTTTTAAGAGAAGGTAAAGTTCGTGATTTTCCCAGTTGGAGAAACGGTGAAGCCCTCCTAAGTCATTGTTGGGTTCCTAGACGGAT
TCCTCCCGGAACTCCGGATTTTTTGGAATGTGTTTCAACCCCAATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAAT
ACACAATGACCGTAGTGTGA

mRNA sequence

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Protein sequence

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MDPDDLDEHELVAIFTAFTTAQAQIFLLLDLYMNDYRRIEHQSPYLRHHIRHLTFFRLIHESDLRCRESTRMDRRCFAILCTLLRTVAGLTGTEVVDVEEMVAMFLHILA
HDVKNRVVRTQFARSGETVSRHFNTVLHGVLRLHEVLIKKPEPVTTSCTDPRWKWFQENYNSQNQEKFHRVEKEKCYGSSLCLMAHSDNDYGDDSDENEVNHKSRTYDEL
YDAFESMHQDLEKLGSKYVKLSKKYKTLSIENKSLINENACLKNGANNVLLHNEVDSDCDEKNVKVNRIKFLEKENEDLKSLSCELKLELNDLRNNNEKIESFSLELKDE
IASLKNKIIDLETSNTSLENDKLALIDKIKFIECDSHEKNDLLHVLKEKELLANKELEIAKESIKKLTIGAQKLDKIIDMGKPFNDKRGLGYVDENSSSNSKTIFVKATP
SMPKNILPNVSNFVESKFVPRDEKSRPMHEKSKFVPKHVDEKFKCLHIAKFGPRHKKAKNVDVKSKFVPRCHFCGVKVEGLILLLIILPVWANHVRRQPCGFRTILNGCK
RIKIMLLVVLREGKVRDFPSWRNGEALLSHCWVPRRIPPGTPDFLECVSTPMKYDRSSTRQLAIPSSVTGVHQYTMTVV

Spg028207 (gene) of Sponge gourd (cylindrica) v1 genome