; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028212 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028212
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:46289011..46295040
RNA-Seq ExpressionSpg028212
SyntenySpg028212
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.4e-3252.69Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        Q +TL EFF ++F   H KE       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+ L 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMK+K SV INTEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-3354.49Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        Q +TL EFF ++F   H +E     T +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMK+K SV INTEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3252.73Show/hide
Query:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS
        +TL EF S++F   H +E       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Subjt:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS

Query:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        TSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMK+K SV INTEGSL
Subjt:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

TYK02147.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-3253.57Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        +L+TL EFF ++F   H KE       + + +          EEVDN  + ++RTSV  RIKP TTR SVFQR+SMA  EEE+QC  S STR  AF+RL 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLF-DEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+TNDQ +R+M  L+ KLF +E N+D+K+H+ IPSRMK+K SV I+TEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLF-DEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3252.73Show/hide
Query:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS
        +TL EF S++F   H +E       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Subjt:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS

Query:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        TSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMK+K SV INTEGSL
Subjt:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein3.1e-3252.69Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        Q +TL EFF ++F   H KE       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+ L 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMK+K SV INTEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.3e-3354.49Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        Q +TL EFF ++F   H +E     T +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMK+K SV INTEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein4.1e-3252.73Show/hide
Query:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS
        +TL EF S++F   H +E       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Subjt:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS

Query:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        TSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMK+K SV INTEGSL
Subjt:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

A0A5D3BRW2 Retrotransposon gag protein1.8e-3253.57Show/hide
Query:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG
        +L+TL EFF ++F   H KE       + + +          EEVDN  + ++RTSV  RIKP TTR SVFQR+SMA  EEE+QC  S STR  AF+RL 
Subjt:  QLVTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLG

Query:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLF-DEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        +STSKK + STS FDRLK+TNDQ +R+M  L+ KLF +E N+D+K+H+ IPSRMK+K SV I+TEGSL
Subjt:  VSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLF-DEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein4.1e-3252.73Show/hide
Query:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS
        +TL EF S++F   H +E       +   +          EEVDN  + +QRTSV +RIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +S
Subjt:  VTLNEFFSKTF---HKKEEGNFVTSYCIDV----------EEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVS

Query:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL
        TSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMK+K SV INTEGSL
Subjt:  TSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKKKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACACCCTGATCGCCATTATTCCTAAAAGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACATGA
TTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATT
CTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAACTGGTGACTTTAAATGAATTCTTCTCCAAAACTTTCCACAAAAAG
GAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACCTCCGTCTTGAATCGCATCAAGCCTCCAACTAC
TCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCA
CATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTA
AACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAAGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCG
TTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGC
TGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCC
AAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTC
TCACGCTGCTTCGCTGCAGTTCCTTCTGTCCAAGTTCGAAGATTCTCATGCGCTTCATTGCAGTCCCTTCTTTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCG
CCAAGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGCTGCACTGTTTCCT
TCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTTCTTCCTTCTCCATGTTCGAAAGTTTTGACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCATGCT
GCGCTGTTTCGCTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGT
TCGAAGGTTCTGATGTTGCACTGCTTCCTTCTTTAAGTTTGAAGTTTCCCACATTGCGCTGTTGGGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTT
CGCTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGTTGCTTCTTCACCAAGTTCGAAGATTC
ACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAG
TTCCAAGGTTCTTACGCTACACTGCTTGCTTCACCAAATTGAAGGTTATTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACA
CTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCGTTCTCCAAATTCGAAGGTTCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAACACCCTGATCGCCATTATTCCTAAAAGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACATGA
TTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATT
CTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAACTGGTGACTTTAAATGAATTCTTCTCCAAAACTTTCCACAAAAAG
GAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACCTCCGTCTTGAATCGCATCAAGCCTCCAACTAC
TCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCA
CATCGAAGAAAAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTA
AACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAAGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCGCTTCG
TTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTTCATTCTCTCAAGTTCGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGC
TGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCC
AAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTC
TCACGCTGCTTCGCTGCAGTTCCTTCTGTCCAAGTTCGAAGATTCTCATGCGCTTCATTGCAGTCCCTTCTTTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCG
CCAAGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTGACGCTGCACTGTTTCCT
TCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTTCTTCCTTCTCCATGTTCGAAAGTTTTGACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCATGCT
GCGCTGTTTCGCTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGT
TCGAAGGTTCTGATGTTGCACTGCTTCCTTCTTTAAGTTTGAAGTTTCCCACATTGCGCTGTTGGGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTT
CGCTGTTCCTTCTCTAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGTTGCTTCTTCACCAAGTTCGAAGATTC
ACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGCTCTCACGCTGCGCTGTTTCCTTCTCCAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAG
TTCCAAGGTTCTTACGCTACACTGCTTGCTTCACCAAATTGAAGGTTATTCGCTGTACTGCTACGCTGCCAGTCCAGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACA
CTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCGTTCTCCAAATTCGAAGGTTCTGCTTTGA
Protein sequenceShow/hide protein sequence
MNNTLIAIIPKSQETTLQGAYTNDKFLVKYNPLFEHDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESSQTQLVTLNEFFSKTFHKK
EEGNFVTSYCIDVEEVDNFEKGEQRTSVLNRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEV
NNDEKLHSSIPSRMKKKFSVLINTEGSLKFEGSHALRCSSFFSISKVLTRFVAVHSLKFEVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFS
KFEGSQLYDCYVVPPPSAKDLMFTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALHCSPFFSSSKVHTLRCFFAKFEGSHVALFLHQVRRFSRCAASFTKFEGSDAALFP
SLSSKVPTLRCCASSFSMFESFDVALLPSPSSKVLMLRCFAVPSLSSKILMRFVAVPSLQVRRLSRCAVSFSKFEGSDVALLPSLSLKFPTLRCWVASFTKFEGSHAALF
RCSFSKFEDSHALRCSSFSSSSKVHTLRCFFTKFEDSHVALFLHQIRRLSRCAVSFSKFEGSHIALLCCFLLQVPRFLRYTACFTKLKVIRCTATLPVQSLSKFEGSDAT
LLPSPRSKVLVLRCFAYRSPNSKVLL