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Spg028216 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028216
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmalignant T-cell-amplified sequence 1 homolog
Genome locationscaffold2:45326800..45328024
RNA-Seq ExpressionSpg028216
SyntenySpg028216
Gene Ontology termsGO:0001731 - formation of translation preinitiation complex (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR016437 - MCT-1/Tma20
IPR041366 - Pre-PUA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACA24498.1 pseudouridine synthase and archaeosine transglycosylase-like protein [Cucumis sativus]2.2e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_008450609.1 PREDICTED: malignant T-cell-amplified sequence 1 homolog [Cucumis melo]2.2e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_011659846.1 malignant T-cell-amplified sequence 1 homolog [Cucumis sativus]2.2e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_022135845.1 malignant T-cell-amplified sequence 1 homolog [Momordica charantia]2.2e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

XP_038887727.1 malignant T-cell-amplified sequence 1 homolog [Benincasa hispida]2.2e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

TrEMBL top hitse value%identityAlignment
A0A0A0LYF6 PUA domain-containing protein1.1e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A1S3BPJ3 malignant T-cell-amplified sequence 1 homolog1.1e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A6J1C273 malignant T-cell-amplified sequence 1 homolog1.1e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

A0A6J1HVW2 malignant T-cell-amplified sequence 1 homolog2.4e-3796.43Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

B3TLK5 Pseudouridine synthase and archaeosine transglycosylase-like protein1.1e-3797.62Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + FSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

SwissProt top hitse value%identityAlignment
Q2KIE4 Malignant T-cell-amplified sequence 12.7e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q4G009 Malignant T-cell-amplified sequence 12.7e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q86KL4 Malignant T-cell-amplified sequence 1 homolog1.6e-1953.95Show/hide
Query:  SAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        +  NQ+K+S+QR I+ SI  +YP L+ + +D+ PKK P++  KCQNH+NLV++NN  LFFN R+GPY PTLR LH+
Subjt:  SAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q9DB27 Malignant T-cell-amplified sequence 12.7e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Q9ULC4 Malignant T-cell-amplified sequence 12.7e-1444.3Show/hide
Query:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        E+VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ ++ VN   LFF  R+GP+ PTLRLLH+
Subjt:  EDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ

Arabidopsis top hitse value%identityAlignment
AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein1.0e-3278.57Show/hide
Query:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ
        + F  E++S+QNQVKASVQR+IRQSI +EYPGLE V++DLLPKK PLIV KC NHL LVVVNNVPLFF IRDGPYMPTLRLLHQ
Subjt:  QSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCAAGAGCTCCGACCGGCTTAATACGCACGCAGCTGCTGTCGCCGGTCGGTTAACTGTTCTCTCTTCTCTACTTCCGCTAACTTTCTCTTCCGATTTCCACACCGATAC
TCTTGTGGGCTCCGAGCAATCGTTTTCTACTGAAGACGTGTCTGCTCAGAATCAAGTCAAGGCATCGGTGCAACGGAAAATTCGGCAAAGTATCGCGGAAGAATATCCTG
GACTAGAGCCAGTTTTGGATGATTTGCTGCCTAAAAAAGCCCCTCTGATCGTTACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTC
AATATCCGTGATGGGCCCTACATGCCTACCTTAAGGTTGCTTCATCAATGTAATGTTTTCTTTCTCTGA
mRNA sequenceShow/hide mRNA sequence
CCCAAGAGCTCCGACCGGCTTAATACGCACGCAGCTGCTGTCGCCGGTCGGTTAACTGTTCTCTCTTCTCTACTTCCGCTAACTTTCTCTTCCGATTTCCACACCGATAC
TCTTGTGGGCTCCGAGCAATCGTTTTCTACTGAAGACGTGTCTGCTCAGAATCAAGTCAAGGCATCGGTGCAACGGAAAATTCGGCAAAGTATCGCGGAAGAATATCCTG
GACTAGAGCCAGTTTTGGATGATTTGCTGCCTAAAAAAGCCCCTCTGATCGTTACTAAGTGTCAAAACCATCTCAATCTGGTTGTTGTGAACAATGTGCCACTCTTTTTC
AATATCCGTGATGGGCCCTACATGCCTACCTTAAGGTTGCTTCATCAATGTAATGTTTTCTTTCTCTGA
Protein sequenceShow/hide protein sequence
PKSSDRLNTHAAAVAGRLTVLSSLLPLTFSSDFHTDTLVGSEQSFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNLVVVNNVPLFF
NIRDGPYMPTLRLLHQCNVFFL