; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028221 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028221
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein root UVB sensitive 4
Genome locationscaffold2:42132036..42133087
RNA-Seq ExpressionSpg028221
SyntenySpg028221
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605260.1 Protein root UVB sensitive 4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0865.45Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYVFYVKWKFLH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
XP_004148047.1 protein root UVB sensitive 4 [Cucumis sativus]7.1e-0863.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     + V  +K F IPKNVSEHYV YVKWK LH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
XP_022947713.1 protein root UVB sensitive 4 [Cucurbita moschata]1.6e-0763.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYV YVKWKFLH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
XP_023006924.1 protein root UVB sensitive 4 [Cucurbita maxima]1.6e-0763.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYV YVKWKFLH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
XP_038902630.1 protein root UVB sensitive 4 [Benincasa hispida]1.2e-0763.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYVFYVKWK LH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
TrEMBL top hitse value%identityAlignment
A0A0A0LJK7 Uncharacterized protein3.4e-0863.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     + V  +K F IPKNVSEHYV YVKWK LH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
A0A1S3C7R7 protein root UVB sensitive 47.6e-0861.82Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     + V  +K F IPKNVSEHYV YVKWK LH +FSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
A0A5D3CTG1 Protein root UVB sensitive 47.6e-0861.82Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     + V  +K F IPKNVSEHYV YVKWK LH +FSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
A0A6J1G7D2 protein root UVB sensitive 47.6e-0863.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYV YVKWKFLH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
A0A6J1L3I6 protein root UVB sensitive 47.6e-0863.64Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF          +K F IPKNVSEHYV YVKWKFLH VFSSALQVIATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
SwissProt top hitse value%identityAlignment
Q67YT8 Protein root UVB sensitive 44.3e-0854.55Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     L     K F +PK VS++Y+ YVKWKFLH VFSSALQV+ATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
Arabidopsis top hitse value%identityAlignment
AT2G23470.1 Protein of unknown function, DUF6473.1e-0954.55Show/hide
Query:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL
        GF     L     K F +PK VS++Y+ YVKWKFLH VFSSALQV+ATQ + R++
Subjt:  GFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGGCCCCGGTCCCAGCATGCTGGTTCGCTTGCCCGTCGTCCTTCGCCGGTCCGGCAGGGTCTCTCAGTACGTGTGAGATGGGTTTTCTCTACAGTTGGTCGCC
GTTGATGGCAGTGCTTCCTCTGTTTCTTTTAATTTCGATGTTGGGTTTCGAACTGTGTACAGAGCTTGTGGTTTGCCTGTTAAAGATTTTTTTAATTCCCAAGAATGTCA
GTGAGCATTATGTATTTTATGTCAAATGGAAGTTTTTGCATGGGGTTTTCAGTTCCGCTCTGCAGGTCATTGCTACTCAGATCTTGCCCAGGAGCCTTAAGCAACTTAGA
CTTCAAGAGACTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATGGCCCCGGTCCCAGCATGCTGGTTCGCTTGCCCGTCGTCCTTCGCCGGTCCGGCAGGGTCTCTCAGTACGTGTGAGATGGGTTTTCTCTACAGTTGGTCGCC
GTTGATGGCAGTGCTTCCTCTGTTTCTTTTAATTTCGATGTTGGGTTTCGAACTGTGTACAGAGCTTGTGGTTTGCCTGTTAAAGATTTTTTTAATTCCCAAGAATGTCA
GTGAGCATTATGTATTTTATGTCAAATGGAAGTTTTTGCATGGGGTTTTCAGTTCCGCTCTGCAGGTCATTGCTACTCAGATCTTGCCCAGGAGCCTTAAGCAACTTAGA
CTTCAAGAGACTGACTAG
Protein sequenceShow/hide protein sequence
MMMAPVPACWFACPSSFAGPAGSLSTCEMGFLYSWSPLMAVLPLFLLISMLGFELCTELVVCLLKIFLIPKNVSEHYVFYVKWKFLHGVFSSALQVIATQILPRSLKQLR
LQETD