; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028226 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028226
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:42563514..42574122
RNA-Seq ExpressionSpg028226
SyntenySpg028226
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-2164.58Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW ELY ESVH+                  EG    +  DDV WLHAIFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2061.62Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIE---------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY ESVH+E                     G    +  DDV WLHA+FRAK  GGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIE---------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2365.98Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-2164.58Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW ELY ESVH+                  EG    +  DDV WLHAIFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2365.98Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.1e-2164.58Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW ELY ESVH+                  EG    +  DDV WLHAIFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase6.9e-2161.62Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIE---------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY ESVH+E                     G    +  DDV WLHA+FRAK  GGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIE---------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7VMG9 Reverse transcriptase2.5e-2365.98Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG

A0A5D3DR18 Gag/pol protein3.1e-2164.58Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW ELY ESVH+                  EG    +  DDV WLHAIFRAK AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase2.5e-2365.98Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTGCACCTCGGGTACAAATGGTCGAGGTCTGGCATGTCACTAGTGGTTTTAAGAGGAGCATCGAAGCCTTGGGTACAAATGGTAAGGGATCGGTGTGATGAGTC
TAGAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTCGAACGCCGAGCTTCGTAGAGAGCATTG
TGGCCTGGGTGCAAATGGTCAGGGGGCAGTGCGACTCGAAGGGTCAGGGTTGCTTACCAGTACCGTGGTTACCCAGAATCCCAGCTAATAGGCAAGAGAATAAGGCAGGT
AATGGCAATGCTCGACAAGGGGTCGATCCCCTGATACCTCCTGGTCAGCACGAAGTTGACCTTCCGCCTCCGCCTCCTCTGGTTCCTCATGCAGCTCCAATACAACCGCG
GAACCCTAATTGGGTACTTGAGAACCCAAATGAATCCCAGTTCATCAGGGACTTCAAGCACTATGGGCCTCCCACCTTTGACGGGCAATCTGAGAATCCTTTGGCAGCAG
AGCAGTGGATCGCTGATCTAGAGTCACTAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCC
GAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGA
AAGTTCCAGATCAAGCTCCAGTACGTGGGCGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCA
TCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGCTCAAGGTGGTAATCAGAGGGCACGCGTCTTTGCCTTCACGAAGGAAGAAGTAGATGATGAAGATGTCGTGGTT
ACAGCGCCAGCCCCCCCTCCTTCAGCTTCTTCTTCTTGCGCCGCGAGGCACCCGTGGCATCATCTTCTCATCCTCCTTTGTTCACCTGCTTCGTCGACGGTGTCGCGACC
ATGGGTCTTCGTCAGAACTCTTCCTCCTCCTGTGTCGGCTGATTTGAGGTCCGTTTCGGCGTGTTCGAGATATCTTGTGTCGTTTTGGACTCGATATAGCTCTAATATTG
TGACCCACTCTTTGGTTGGCCTTAAACTCGAACACCCACTGTCTAGGGACTCTAAGCAAGTGGTTTTAAACCTCTTTCATGCTAGATTTGATGTGCATTCATGGGTTAGC
ATGAGTCGAGAGCACGTTCTTAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTTGAACGCCGA
GCTCCGTAGAGAGCATTGTGGCCCTGGGTGCAAATGGTCAGGGGGTAGTGCGACTCGAAGGGTCAGGGTTGCTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTGCACCTCGGGTACAAATGGTCGAGGTCTGGCATGTCACTAGTGGTTTTAAGAGGAGCATCGAAGCCTTGGGTACAAATGGTAAGGGATCGGTGTGATGAGTC
TAGAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTCGAACGCCGAGCTTCGTAGAGAGCATTG
TGGCCTGGGTGCAAATGGTCAGGGGGCAGTGCGACTCGAAGGGTCAGGGTTGCTTACCAGTACCGTGGTTACCCAGAATCCCAGCTAATAGGCAAGAGAATAAGGCAGGT
AATGGCAATGCTCGACAAGGGGTCGATCCCCTGATACCTCCTGGTCAGCACGAAGTTGACCTTCCGCCTCCGCCTCCTCTGGTTCCTCATGCAGCTCCAATACAACCGCG
GAACCCTAATTGGGTACTTGAGAACCCAAATGAATCCCAGTTCATCAGGGACTTCAAGCACTATGGGCCTCCCACCTTTGACGGGCAATCTGAGAATCCTTTGGCAGCAG
AGCAGTGGATCGCTGATCTAGAGTCACTAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCC
GAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGA
AAGTTCCAGATCAAGCTCCAGTACGTGGGCGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCA
TCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGAGGGGCTCAAGGTGGTAATCAGAGGGCACGCGTCTTTGCCTTCACGAAGGAAGAAGTAGATGATGAAGATGTCGTGGTT
ACAGCGCCAGCCCCCCCTCCTTCAGCTTCTTCTTCTTGCGCCGCGAGGCACCCGTGGCATCATCTTCTCATCCTCCTTTGTTCACCTGCTTCGTCGACGGTGTCGCGACC
ATGGGTCTTCGTCAGAACTCTTCCTCCTCCTGTGTCGGCTGATTTGAGGTCCGTTTCGGCGTGTTCGAGATATCTTGTGTCGTTTTGGACTCGATATAGCTCTAATATTG
TGACCCACTCTTTGGTTGGCCTTAAACTCGAACACCCACTGTCTAGGGACTCTAAGCAAGTGGTTTTAAACCTCTTTCATGCTAGATTTGATGTGCATTCATGGGTTAGC
ATGAGTCGAGAGCACGTTCTTAAAGCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTTGAACGCCGA
GCTCCGTAGAGAGCATTGTGGCCCTGGGTGCAAATGGTCAGGGGGTAGTGCGACTCGAAGGGTCAGGGTTGCTTACTAG
Protein sequenceShow/hide protein sequence
MSVHLGYKWSRSGMSLVVLRGASKPWVQMVRDRCDESRKHRCTLGTNGQGAMHSSRPWVQMVKGRTPSFVESIVAWVQMVRGQCDSKGQGCLPVPWLPRIPANRQENKAG
NGNARQGVDPLIPPGQHEVDLPPPPPLVPHAAPIQPRNPNWVLENPNESQFIRDFKHYGPPTFDGQSENPLAAEQWIADLESLAQDFRAKQEDLWFSLVFRAFWGVQVES
EALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWAELYIESVHIEGQRVSLEEDDVRWLHAIFRAKLAGGPGGAQGGNQRARVFAFTKEEVDDEDVVV
TAPAPPPSASSSCAARHPWHHLLILLCSPASSTVSRPWVFVRTLPPPVSADLRSVSACSRYLVSFWTRYSSNIVTHSLVGLKLEHPLSRDSKQVVLNLFHARFDVHSWVS
MSREHVLKASVHLGYKWPRGDAQFEALGTNGQGLNAELRREHCGPGCKWSGGSATRRVRVAY