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Spg028227 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028227
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold2:43615505..43616022
RNA-Seq ExpressionSpg028227
SyntenySpg028227
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040490.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-1853.25Show/hide
Query:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV-HPHARGMRNKSFPYFDDLAIVFKKDRANG
        S++++  +H+WT  E++ LV+CL++LV +GGWK+DNGTFR GYL Q+ HP A+G+ NK FPY+D+   VF +DRA G
Subjt:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV-HPHARGMRNKSFPYFDDLAIVFKKDRANG

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1846.49Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDEVLV CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP ARG+ NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANG
         DL +VF +DRA G
Subjt:  DDLAIVFKKDRANG

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]3.0e-1845.61Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDEVLV+CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP+A+G+ NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANG
         DL +VF +DRA G
Subjt:  DDLAIVFKKDRANG

TYK29231.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-1961.54Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVHPHARGMRNKSFPYFDDLAIVFKKDRANG
        MAS+ SK  KH WT +EDE LV+CLLQLV+  GW+ADNGTF+ GYL   HP+A+ + NK FPYF DL +VF +DRA G
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVHPHARGMRNKSFPYFDDLAIVFKKDRANG

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]5.7e-1744.35Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDE LV+CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP+AR + NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANGE
         DL IVF +D A G+
Subjt:  DDLAIVFKKDRANGE

TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like2.8e-1744.35Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDE LV+CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP+AR + NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANGE
         DL IVF +D A G+
Subjt:  DDLAIVFKKDRANGE

A0A5A7TB06 Retrotransposon protein2.5e-1853.25Show/hide
Query:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV-HPHARGMRNKSFPYFDDLAIVFKKDRANG
        S++++  +H+WT  E++ LV+CL++LV +GGWK+DNGTFR GYL Q+ HP A+G+ NK FPY+D+   VF +DRA G
Subjt:  SSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV-HPHARGMRNKSFPYFDDLAIVFKKDRANG

A0A5D3C542 Retrotransposon protein1.9e-1846.49Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDEVLV CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP ARG+ NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANG
         DL +VF +DRA G
Subjt:  DDLAIVFKKDRANG

A0A5D3C7T4 Uncharacterized protein1.5e-1845.61Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF
        MAS+ SK  KH WT +EDEVLV+CLLQLV+ GGW+ADNGTF+ GYL+Q                                     HP+A+G+ NK FPYF
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQV------------------------------------HPHARGMRNKSFPYF

Query:  DDLAIVFKKDRANG
         DL +VF +DRA G
Subjt:  DDLAIVFKKDRANG

A0A5D3E0K8 Retrotransposon protein1.3e-1961.54Show/hide
Query:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVHPHARGMRNKSFPYFDDLAIVFKKDRANG
        MAS+ SK  KH WT +EDE LV+CLLQLV+  GW+ADNGTF+ GYL   HP+A+ + NK FPYF DL +VF +DRA G
Subjt:  MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVHPHARGMRNKSFPYFDDLAIVFKKDRANG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGA
CAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCAAGAAGG
ATAGGGCTAATGGAGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCATCCACTTCGAAAGTCCGTAAACATATTTGGACACCAATGGAGGATGAAGTTTTGGTCCAGTGCCTGTTACAGTTAGTTCAAGTAGGTGGTTGGAAGGCTGA
CAACGGGACCTTTAGATCGGGGTATTTGCAACAAGTACACCCACATGCTCGAGGGATGAGGAACAAGTCATTCCCCTACTTCGACGACCTAGCAATTGTGTTCAAGAAGG
ATAGGGCTAATGGAGAG
Protein sequenceShow/hide protein sequence
MASSTSKVRKHIWTPMEDEVLVQCLLQLVQVGGWKADNGTFRSGYLQQVHPHARGMRNKSFPYFDDLAIVFKKDRANGE