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Spg028233 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028233
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold2:41333553..41335247
RNA-Seq ExpressionSpg028233
SyntenySpg028233
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]4.2e-0844.44Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNY+R N +QK K+K K +RK KLV +E++D   ++  VTL DFFP +FL D  ++ P ++ACHA+NA EE    S P ++ K+E + +
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-0842.22Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNY+R+N +QK K+K K +RKPKLV +E++D    +  VT+ D FP +FL D  ++ PE++ CH +NA EE    S PS++ ++E + +
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

KAA0059744.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0851.39Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEE
        +RNY+R+N +QK K+K K ++KPKLV  E++D     H VTL DFFP +FL D  ++  E+V CHA+NA EE
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEE

KAA0063066.1 uncharacterized protein E6C27_scaffold468G001830 [Cucumis melo var. makuwa]1.4e-0828.57Show/hide
Query:  NMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEG----------------------------------
        N +QK K+K K +RK KLV +EN+D    +  VTL DFFP +F  D  ++ P +VACHA+NA EE                                   
Subjt:  NMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEG----------------------------------

Query:  --------------------------------------------------DSSSSPSQNA-----------KKESIEEVDACEVQTKEAPTHPAKSKAPK
                                                          ++ S+P   A           K ++  EV   E+   EA T   KS    
Subjt:  --------------------------------------------------DSSSSPSQNA-----------KKESIEEVDACEVQTKEAPTHPAKSKAPK

Query:  EEASSNVPILRYVPLSRHKKGESPFTKCLGILKKTGRIVIARESLSSIALKL
        +E +SN PIL Y+PLSRHKKGESPF K    L K G I + +ES +++  K+
Subjt:  EEASSNVPILRYVPLSRHKKGESPFTKCLGILKKTGRIVIARESLSSIALKL

KAA0064171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-0844.68Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNY+R N +QK K+K K +RK KLV +E++D   ++  VTL DFFP +FL D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein2.0e-0842.22Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNY+R+N +QK K+K K +RKPKLV +E++D    +  VT+ D FP +FL D  ++ PE++ CH +NA EE    S PS++ ++E + +
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

A0A5A7V9E7 Uncharacterized protein7.0e-0928.57Show/hide
Query:  NMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEG----------------------------------
        N +QK K+K K +RK KLV +EN+D    +  VTL DFFP +F  D  ++ P +VACHA+NA EE                                   
Subjt:  NMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEG----------------------------------

Query:  --------------------------------------------------DSSSSPSQNA-----------KKESIEEVDACEVQTKEAPTHPAKSKAPK
                                                          ++ S+P   A           K ++  EV   E+   EA T   KS    
Subjt:  --------------------------------------------------DSSSSPSQNA-----------KKESIEEVDACEVQTKEAPTHPAKSKAPK

Query:  EEASSNVPILRYVPLSRHKKGESPFTKCLGILKKTGRIVIARESLSSIALKL
        +E +SN PIL Y+PLSRHKKGESPF K    L K G I + +ES +++  K+
Subjt:  EEASSNVPILRYVPLSRHKKGESPFTKCLGILKKTGRIVIARESLSSIALKL

A0A5A7VEL0 Ty3-gypsy retrotransposon protein4.5e-0844.68Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC
        +RNY+R N +QK K+K K +RK KLV +E++D   ++  VTL DFFP +FL D   + P +VACHA+NA EE ++S + S +A   + E    C
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDAC

A0A5D3CDP0 Ty3-gypsy retrotransposon protein1.2e-0851.39Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEE
        +RNY+R+N +QK K+K K ++KPKLV  E++D     H VTL DFFP +FL D  ++  E+V CHA+NA EE
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEE

A0A5D3E3J4 Uncharacterized protein2.0e-0844.44Show/hide
Query:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE
        +RNY+R N +QK K+K K +RK KLV +E++D   ++  VTL DFFP +FL D  ++ P ++ACHA+NA EE    S P ++ K+E + +
Subjt:  FRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGAAACTACAAAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGATAAAAGGTTCAAGAAAACCTAAACTTGTTGTCAAAGAGAATCAAGATCTTGTTCTGTC
TCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAAATTTCTTAATGACGATCATGAGGATATCCCGGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GTGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAAGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGCGAAATCAAAG
GCTCCAAAGGAAGAGGCGTCATCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCACAAGAAAGGGGAATCACCATTTACAAAATGTTTAGGAATTTTGAAGAA
GACAGGAAGAATAGTGATAGCTAGAGAATCTCTGTCGTCGATCGCATTAAAGCTCCAACTACTCGTCTTTCAGTTCATCAGCGGTAGAAATATTCATCTTCAGAAGAGGA
AGGTTAGAGCAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCGCCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGAAACTACAAAAGAAAGAACATGTCACAAAAGCAGAAGAGAAAGATAAAAGGTTCAAGAAAACCTAAACTTGTTGTCAAAGAGAATCAAGATCTTGTTCTGTC
TCGACATCCAGTAACCCTTAAAGATTTCTTCCCAAAGAAATTTCTTAATGACGATCATGAGGATATCCCGGAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAG
GTGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAAGAGTCAATTGAAGAGGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGCGAAATCAAAG
GCTCCAAAGGAAGAGGCGTCATCAAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGGCACAAGAAAGGGGAATCACCATTTACAAAATGTTTAGGAATTTTGAAGAA
GACAGGAAGAATAGTGATAGCTAGAGAATCTCTGTCGTCGATCGCATTAAAGCTCCAACTACTCGTCTTTCAGTTCATCAGCGGTAGAAATATTCATCTTCAGAAGAGGA
AGGTTAGAGCAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCGCCGTTTGA
Protein sequenceShow/hide protein sequence
MFRNYKRKNMSQKQKRKIKGSRKPKLVVKENQDLVLSRHPVTLKDFFPKKFLNDDHEDIPEIVACHAVNAFEEGDSSSSPSQNAKKESIEEVDACEVQTKEAPTHPAKSK
APKEEASSNVPILRYVPLSRHKKGESPFTKCLGILKKTGRIVIARESLSSIALKLQLLVFQFISGRNIHLQKRKVRAKLLLLLDVQCFAV