; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028262 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028262
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:26476402..26481200
RNA-Seq ExpressionSpg028262
SyntenySpg028262
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019172068.1 PREDICTED: uncharacterized protein LOC109167502 [Ipomoea nil]4.4e-1637.23Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W+RPP G  KLNVDA+  S+  RMG G ++RD  GA++A     +   + P  AEA+A+ E +K  R  NI+ +L+E+DC  +++ ++   +  S   + 
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL
        V+D++ +A  FSN+ F    R+ N  AH LA++ LS+
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]3.6e-1833.12Show/hide
Query:  WWSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGV
        +W+ P   W K+NVD +C  S  R GIG V ++  G ++  +     V Y P   E LAILE + L + L++ F+ V+SD +  I++++    P  +  V
Subjt:  WWSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGV

Query:  WVHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLG-SFLWLSNLPDWLLPSLR
        WV DI   A++F +++F H+ R+ +   H LA   +S   + +W+S  P+WL    R
Subjt:  WVHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLG-SFLWLSNLPDWLLPSLR

XP_023923041.1 uncharacterized protein LOC112034451 [Quercus suber]4.6e-1834.78Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W  P +GW K N D +  S  ++ G+G VI+D  GAV+A  +     +Y P   EALA L+   LAR L    +++E D   LI  L       S  G+ 
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSLV
        V D+K +  SF  +++ HV RN N  AH LA+  L +  S +W+ ++P  +   L +D +V
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSLV

XP_030959121.1 uncharacterized protein LOC115981075 [Quercus lobata]2.6e-1632.28Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W+ PP G+ K+N D + + S    G+G VIRD  GA+LA      +  +   + EALA L+ +  A  L    +++E D   LI  L          G+ 
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD
        V D+K+    F  V++ HV RN N  AH LA+  L +  F +W+ ++P  ++  L++D
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD

XP_030964436.1 uncharacterized protein LOC115985655 [Quercus lobata]6.7e-1734.18Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W+ PP G+ K+N D + + S    G+G VIRD  GAVLA      + S+   + EALA L+ +  A  L    +++E D   LI  L          G+ 
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD
        V D+K+ A  F  V++ HV RN N  AH LA+  L +  F +W+ ++P  ++  L++D
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD

TrEMBL top hitse value%identityAlignment
A0A1R3HKR2 Reverse transcriptase5.2e-1539.69Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W+ PP G  KLNVDAS S   +  G+G V RD GGAVL           SP  AE  A+L   ++A     N  ++ESD  + I  +N     + EEG  
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLA
        +++I++LAL F    F HV+R  N+ AH LA
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLA

A0A2N9IGQ4 Uncharacterized protein3.0e-1534.81Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W +P +G+ K+N D +  +  +  GIG V+RD  G  +A L+       S    EALA    ++ AR L ++ +  E D   + D LNG     +  G+ 
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD
        + D K+LALS  N  F HV RN NM AH LA++     +  +W  + P  L P LR D
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLGSF-LWLSNLPDWLLPSLRMD

A0A6J1DJL6 uncharacterized protein LOC1110217111.7e-1833.12Show/hide
Query:  WWSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGV
        +W+ P   W K+NVD +C  S  R GIG V ++  G ++  +     V Y P   E LAILE + L + L++ F+ V+SD +  I++++    P  +  V
Subjt:  WWSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGV

Query:  WVHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLG-SFLWLSNLPDWLLPSLR
        WV DI   A++F +++F H+ R+ +   H LA   +S   + +W+S  P+WL    R
Subjt:  WVHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLG-SFLWLSNLPDWLLPSLR

A0A803NI26 Uncharacterized protein8.0e-1633.12Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W  PP+G  KLNVDA+  S  +RMG+G+++RD  G V A L+     ++     EA AI   +  A+   +   +VESDC +++  LNG +S        
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSL
        + D+K+    F NV   HV R+ N  AH LA++ L +    +W  ++P  ++  +  +SL
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSL

A0A803QS40 Uncharacterized protein1.0e-1532.5Show/hide
Query:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW
        W  PP+   K+NVDA+ SS+C+++G G++IRD  G V A L+   A ++     EA A+   +  A  +++   +VESD  +++  LNG  S   +    
Subjt:  WSRPPEGWSKLNVDASCSSSCHRMGIGSVIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVW

Query:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSL
        + D+K+      NV   HV R+ N  AH LA++ L+L    +W  N+   +   +  DSL
Subjt:  VHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSL-GSFLWLSNLPDWLLPSLRMDSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCGCCGCACTGCCACCTGTCGTCGCTGCTCGCTGTCGCCGGAGAAGGAGCGCCGCCGGAGTTGGGTATTTGGAGGCTGTCGGTTGGTGGCTGGCGCATCTCATGG
CAAAAACACAAGGGCGCTGGAGCATTTAACTCTTGCTTTTATGACTTGGGCTTTGTCAACATTGAGATGGTCACTCTATAAATCCTTGGAAATGAGGGAGGTTCCTCGAC
TCAAACTTCAAGTTGAAATCTATGCCCTGGTTGACTCCAATCTCGCCGTAAAAATCGCCGGAAAAACAACCAAAAGTCGAGACCCACGCCGCCAAACTCCCAAAACGCTG
CTGCACGCCAGAACCCACGCGCAGATCGCTGAACGACGTCGGAAATCGCTGTCTGCACCCACTGGAACGCGCGCCGCCGTGGCCCTTGGAAACTGTCGTTCACGCTACAG
CCGCCGCAACTCCCCAACCGACCTGTTCTGCTCGCCAGAGGGACGCACCGCCACACTGCCACCTGCCGCCGCTGCTCGCTGTCGCCGGAGAAGGAGCGCCGCCGGAGTTG
GGTATTTGGAGGCTGTCGGCTGGTGGTGGTCTCGACCTCCTGAGGGTTGGAGCAAGTTAAATGTTGATGCTTCTTGCTCCTCTAGTTGTCATCGAATGGGGATTGGATCA
GTTATTCGGGATTGCGGTGGTGCAGTCTTGGCGCCTTTGACTAACTCTTTTGCTGTGTCTTACTCTCCTTTTAATGCAGAAGCGTTGGCTATTTTGGAGTGTATGAAGCT
TGCTCGCCGCTTGAATATTAATTTTCTTCTGGTTGAGTCGGACTGCAAGGTTTTGATTGATATACTTAATGGCGGTGCTTCTCCTTTCTCTGAGGAAGGGGTTTGGGTCC
ATGATATTAAGGATTTGGCCTTGTCTTTTTCTAATGTGATTTTCTGTCATGTGAGTCGTAATTGTAATATGCCTGCTCACTGTCTTGCGCAAAAGGGTTTATCTCTAGGA
TCTTTTCTGTGGCTTTCTAATCTCCCAGATTGGTTGTTACCTTCTCTGAGGATGGATTCTTTAGTTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACCGCCGCACTGCCACCTGTCGTCGCTGCTCGCTGTCGCCGGAGAAGGAGCGCCGCCGGAGTTGGGTATTTGGAGGCTGTCGGTTGGTGGCTGGCGCATCTCATGG
CAAAAACACAAGGGCGCTGGAGCATTTAACTCTTGCTTTTATGACTTGGGCTTTGTCAACATTGAGATGGTCACTCTATAAATCCTTGGAAATGAGGGAGGTTCCTCGAC
TCAAACTTCAAGTTGAAATCTATGCCCTGGTTGACTCCAATCTCGCCGTAAAAATCGCCGGAAAAACAACCAAAAGTCGAGACCCACGCCGCCAAACTCCCAAAACGCTG
CTGCACGCCAGAACCCACGCGCAGATCGCTGAACGACGTCGGAAATCGCTGTCTGCACCCACTGGAACGCGCGCCGCCGTGGCCCTTGGAAACTGTCGTTCACGCTACAG
CCGCCGCAACTCCCCAACCGACCTGTTCTGCTCGCCAGAGGGACGCACCGCCACACTGCCACCTGCCGCCGCTGCTCGCTGTCGCCGGAGAAGGAGCGCCGCCGGAGTTG
GGTATTTGGAGGCTGTCGGCTGGTGGTGGTCTCGACCTCCTGAGGGTTGGAGCAAGTTAAATGTTGATGCTTCTTGCTCCTCTAGTTGTCATCGAATGGGGATTGGATCA
GTTATTCGGGATTGCGGTGGTGCAGTCTTGGCGCCTTTGACTAACTCTTTTGCTGTGTCTTACTCTCCTTTTAATGCAGAAGCGTTGGCTATTTTGGAGTGTATGAAGCT
TGCTCGCCGCTTGAATATTAATTTTCTTCTGGTTGAGTCGGACTGCAAGGTTTTGATTGATATACTTAATGGCGGTGCTTCTCCTTTCTCTGAGGAAGGGGTTTGGGTCC
ATGATATTAAGGATTTGGCCTTGTCTTTTTCTAATGTGATTTTCTGTCATGTGAGTCGTAATTGTAATATGCCTGCTCACTGTCTTGCGCAAAAGGGTTTATCTCTAGGA
TCTTTTCTGTGGCTTTCTAATCTCCCAGATTGGTTGTTACCTTCTCTGAGGATGGATTCTTTAGTTTGTTAG
Protein sequenceShow/hide protein sequence
MHRRTATCRRCSLSPEKERRRSWVFGGCRLVAGASHGKNTRALEHLTLAFMTWALSTLRWSLYKSLEMREVPRLKLQVEIYALVDSNLAVKIAGKTTKSRDPRRQTPKTL
LHARTHAQIAERRRKSLSAPTGTRAAVALGNCRSRYSRRNSPTDLFCSPEGRTATLPPAAAARCRRRRSAAGVGYLEAVGWWWSRPPEGWSKLNVDASCSSSCHRMGIGS
VIRDCGGAVLAPLTNSFAVSYSPFNAEALAILECMKLARRLNINFLLVESDCKVLIDILNGGASPFSEEGVWVHDIKDLALSFSNVIFCHVSRNCNMPAHCLAQKGLSLG
SFLWLSNLPDWLLPSLRMDSLVC