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Spg028270 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028270
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:25236596..25247696
RNA-Seq ExpressionSpg028270
SyntenySpg028270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO64558.1 hypothetical protein CCACVL1_21676 [Corchorus capsularis]3.1e-1144.94Show/hide
Query:  DLSILSYSNFHIDSSIIWERRS--WQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
        D++ILSYS+ HID  I  +  S  W+FTGF G PD ++R   W LLR+LH +    W +G D NEI   DEK+GG  R    + NF ++
Subjt:  DLSILSYSNFHIDSSIIWERRS--WQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

OMP01909.1 reverse transcriptase [Corchorus capsularis]2.4e-1147.67Show/hide
Query:  LSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHE
        +SI+SYSN HID ++   +   W+FTGF G+P+ NKR   W LLR L       WL  +D NEI  NDEKLGG  R    M +F E
Subjt:  LSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHE

XP_030497841.1 uncharacterized protein LOC115713498 [Cannabis sativa]6.2e-1245.56Show/hide
Query:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
        I + +ILS+S+FHIDS I  E  + W+FTGF G PDPN+RS  W+LL R+       W++G D NEI  + EKLGG  +   ++ NF ++
Subjt:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

XP_030505141.1 uncharacterized protein LOC115720120 [Cannabis sativa]2.0e-1034.9Show/hide
Query:  STQRRDAVSLASRRCRAENKGEENVLFLVPASGSISLAAFLFSSMVGEVVFVFLGKKKLIYDLSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRS
        S  R  +  L S R R +++G     F V A G     A L+               K  + +   S+++FHID+ I I E  +W+FTGF G PDP++R 
Subjt:  STQRRDAVSLASRRCRAENKGEENVLFLVPASGSISLAAFLFSSMVGEVVFVFLGKKKLIYDLSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRS

Query:  IGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
          W+LL+RL  N    WL G D NEI    +KLGG  +   +M NF+ +
Subjt:  IGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

XP_042963294.1 uncharacterized protein LOC122297082 [Carya illinoinensis]1.2e-1037.84Show/hide
Query:  LSILSYSNFHIDSSIIWE--RRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHESFKFEEHWSFHDN
        L IL++S +HI S I  E  ++ W FTGF G PD +KR++ WELL  L       W V  D NEI    EK+GG  RD   M  F E  + ++       
Subjt:  LSILSYSNFHIDSSIIWE--RRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHESFKFEEHWSFHDN

Query:  CKYIIKEAGCW
            + + GCW
Subjt:  CKYIIKEAGCW

TrEMBL top hitse value%identityAlignment
A0A2N9EK24 CCHC-type domain-containing protein1.8e-1248.31Show/hide
Query:  YDLSILSYSNFHIDSSII-WERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
        YD++I S+S+ HID+ II  E R+W+ TGF GQPD +KR   W LLR LH      WLV  DLNEI  N E  G   R P  M  F ++
Subjt:  YDLSILSYSNFHIDSSII-WERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

A0A803NSJ4 Uncharacterized protein3.9e-1238.05Show/hide
Query:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHESFKFEEHWSFH
        + D +ILS+S+FHIDS I  E  + W+FTGF G PDPN+R   W+LL R+       W++G D NEI    EK+GG  +   ++ NF ++          
Subjt:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHESFKFEEHWSFH

Query:  DNCKYIIKEAGCW
         N K +  E  C+
Subjt:  DNCKYIIKEAGCW

A0A803PC75 Uncharacterized protein3.0e-1245.56Show/hide
Query:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
        I + +ILS+S+FHIDS I  E  + W+FTGF G PDPN+RS  W+LL R+       W++G D NEI  + EKLGG  +   ++ NF ++
Subjt:  IYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

A0A803PRV5 Uncharacterized protein3.0e-1245.45Show/hide
Query:  DLSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES
        +  +LSYS FHIDS I I   + W+FTGF G PDP++R   W+LL+RL+      W+VG D NEI    EKLGG+ +   ++ NF ++
Subjt:  DLSILSYSNFHIDSSI-IWERRSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHES

A0A803Q6L7 Uncharacterized protein3.9e-1237.4Show/hide
Query:  FLVPASGSISLAAFLFSSMVGEVVFVFLGKKKLIYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEI
        F+V A G  S    L+S+++               D +ILS+S+FHIDS I  E  + W+FTGF G PDPN+R   W+LL R+       W++G D NEI
Subjt:  FLVPASGSISLAAFLFSSMVGEVVFVFLGKKKLIYDLSILSYSNFHIDSSIIWER-RSWQFTGFCGQPDPNKRSIGWELLRRLHNNGFSVWLVGEDLNEI

Query:  HWNDEKLGGVQRDPCVMANFHES
            EK+GG  +   ++ NF ++
Subjt:  HWNDEKLGGVQRDPCVMANFHES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCGCAGCGTTTGTATCAAATACAAAGTGGGCCGTATCCATAGTGTCACCAG
GATAAGGCACCCAGTCTTATCCCTATACTATAGACCCTTTAGGCTGAATCAAACATTTCAATGGAAATTGACGCTTTTGAAGATTACTGGTGATTTAGGAGCTAAAGAAA
TAAATTCGAGTGAAGAAAGGAGCGAAGTAGGAGGCGCGAATACGAGGCAGCGTCGAGACGCTACCTCCACAGCGTCTCAACACTGCGAGCTTTCCAGAATTAAATTAGGG
CGTACATCCACACAGCGTCGCGACGCTGTGTCCTTAGCGTCGCGACGCTGTCGTGCAGAAAATAAAGGTGAAGAGAATGTGTTGTTTCTGGTTCCTGCTTCGGGTTCAAT
TTCTTTGGCTGCTTTTCTGTTTTCGAGCATGGTAGGGGAGGTGGTATTTGTATTCTTAGGAAAGAAGAAGTTGATTTATGATTTATCTATCCTTTCCTATTCAAATTTTC
ATATTGATTCATCTATTATATGGGAAAGAAGATCTTGGCAGTTTACTGGTTTTTGTGGCCAGCCTGATCCAAATAAGAGGTCAATTGGTTGGGAGCTTCTTCGAAGGCTT
CATAATAATGGTTTTTCTGTCTGGCTTGTAGGTGAGGATTTAAATGAAATTCATTGGAATGATGAGAAGTTAGGTGGTGTTCAAAGAGATCCTTGTGTTATGGCAAATTT
TCATGAGTCTTTTAAGTTTGAAGAGCATTGGTCCTTTCATGATAATTGTAAGTATATTATTAAAGAGGCTGGTTGTTGGGATTCCAATAGCAGCAAGGAGGAGTCTTGTG
GCTTGAGCACATGTTTGACTTTTAAGGGAACTCAACAAAGTCAAGAAAAACCATATTATGGACAATTGATGATGTATGACCTTGTTTTTATGGATGCACTTACTCAGATT
GTTGCGTGTTGTGATGAACCTTATGTACTAAATTTACTTAGGGATCCTAGAAGGACCTCTAGCTTTTGTGGAAAGGTCCTTGTTACGAAATACAAAATGTCGCATGATGG
AGAAGAAGTTCTAGAAGTGATAGATCCAAATGTGGCTATTCTTCAAGCAATTCAAGACAATCTCATGGAGTCTTATCAGCAGGATCCTCCTAGAACTCCGAATTTTTTGG
AATGTGTTTCAACTCCAATGAAGTATTACCGATCATGCACTAGGCAATTGGTTATCTTTAACTCAACTGCTGGCATCCACCAACTATCAATATTTCCAATCGGCTTTGAC
TCTAATCGGCCTCCAAAAGATGGAATACTTTTACTTCATACGGCTACTCTTATTTATAAGATGAGGTTTAACCTAATTAGGTTAATTATGACACGTGGAGTACTTCCCAA
GTCTGATAAATCCGAGATCTATGCTGAAAACGCCACCTCATTTAATGAATCACGTGCAGCTCACGTGGCCCATTTTGCATATGGGAAATTTGGGGCTGCCAAAAGAGTGG
AGGCCGAGAGCTCTAATACTAAGAAGATTGAAGCTTCCAAGGAGTTTTGGAGCCATCTCGATGTCTTGGACAACGAGGAGGTGAAGAGACCCAATTGTGCTGAAGCGAAT
CTGAATTATGACACCAAAATCCGAAGATTGAAGCCCCAAACCGAGAAGAAGCAAGACAAAGTCGAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCGCAGCGTTTGTATCAAATACAAAGTGGGCCGTATCCATAGTGTCACCAG
GATAAGGCACCCAGTCTTATCCCTATACTATAGACCCTTTAGGCTGAATCAAACATTTCAATGGAAATTGACGCTTTTGAAGATTACTGGTGATTTAGGAGCTAAAGAAA
TAAATTCGAGTGAAGAAAGGAGCGAAGTAGGAGGCGCGAATACGAGGCAGCGTCGAGACGCTACCTCCACAGCGTCTCAACACTGCGAGCTTTCCAGAATTAAATTAGGG
CGTACATCCACACAGCGTCGCGACGCTGTGTCCTTAGCGTCGCGACGCTGTCGTGCAGAAAATAAAGGTGAAGAGAATGTGTTGTTTCTGGTTCCTGCTTCGGGTTCAAT
TTCTTTGGCTGCTTTTCTGTTTTCGAGCATGGTAGGGGAGGTGGTATTTGTATTCTTAGGAAAGAAGAAGTTGATTTATGATTTATCTATCCTTTCCTATTCAAATTTTC
ATATTGATTCATCTATTATATGGGAAAGAAGATCTTGGCAGTTTACTGGTTTTTGTGGCCAGCCTGATCCAAATAAGAGGTCAATTGGTTGGGAGCTTCTTCGAAGGCTT
CATAATAATGGTTTTTCTGTCTGGCTTGTAGGTGAGGATTTAAATGAAATTCATTGGAATGATGAGAAGTTAGGTGGTGTTCAAAGAGATCCTTGTGTTATGGCAAATTT
TCATGAGTCTTTTAAGTTTGAAGAGCATTGGTCCTTTCATGATAATTGTAAGTATATTATTAAAGAGGCTGGTTGTTGGGATTCCAATAGCAGCAAGGAGGAGTCTTGTG
GCTTGAGCACATGTTTGACTTTTAAGGGAACTCAACAAAGTCAAGAAAAACCATATTATGGACAATTGATGATGTATGACCTTGTTTTTATGGATGCACTTACTCAGATT
GTTGCGTGTTGTGATGAACCTTATGTACTAAATTTACTTAGGGATCCTAGAAGGACCTCTAGCTTTTGTGGAAAGGTCCTTGTTACGAAATACAAAATGTCGCATGATGG
AGAAGAAGTTCTAGAAGTGATAGATCCAAATGTGGCTATTCTTCAAGCAATTCAAGACAATCTCATGGAGTCTTATCAGCAGGATCCTCCTAGAACTCCGAATTTTTTGG
AATGTGTTTCAACTCCAATGAAGTATTACCGATCATGCACTAGGCAATTGGTTATCTTTAACTCAACTGCTGGCATCCACCAACTATCAATATTTCCAATCGGCTTTGAC
TCTAATCGGCCTCCAAAAGATGGAATACTTTTACTTCATACGGCTACTCTTATTTATAAGATGAGGTTTAACCTAATTAGGTTAATTATGACACGTGGAGTACTTCCCAA
GTCTGATAAATCCGAGATCTATGCTGAAAACGCCACCTCATTTAATGAATCACGTGCAGCTCACGTGGCCCATTTTGCATATGGGAAATTTGGGGCTGCCAAAAGAGTGG
AGGCCGAGAGCTCTAATACTAAGAAGATTGAAGCTTCCAAGGAGTTTTGGAGCCATCTCGATGTCTTGGACAACGAGGAGGTGAAGAGACCCAATTGTGCTGAAGCGAAT
CTGAATTATGACACCAAAATCCGAAGATTGAAGCCCCAAACCGAGAAGAAGCAAGACAAAGTCGAGAAATAA
Protein sequenceShow/hide protein sequence
MQTHCIGYPHSHVSYTNALDRSVCIKYKVGRIHSVTRIRHPVLSLYYRPFRLNQTFQWKLTLLKITGDLGAKEINSSEERSEVGGANTRQRRDATSTASQHCELSRIKLG
RTSTQRRDAVSLASRRCRAENKGEENVLFLVPASGSISLAAFLFSSMVGEVVFVFLGKKKLIYDLSILSYSNFHIDSSIIWERRSWQFTGFCGQPDPNKRSIGWELLRRL
HNNGFSVWLVGEDLNEIHWNDEKLGGVQRDPCVMANFHESFKFEEHWSFHDNCKYIIKEAGCWDSNSSKEESCGLSTCLTFKGTQQSQEKPYYGQLMMYDLVFMDALTQI
VACCDEPYVLNLLRDPRRTSSFCGKVLVTKYKMSHDGEEVLEVIDPNVAILQAIQDNLMESYQQDPPRTPNFLECVSTPMKYYRSCTRQLVIFNSTAGIHQLSIFPIGFD
SNRPPKDGILLLHTATLIYKMRFNLIRLIMTRGVLPKSDKSEIYAENATSFNESRAAHVAHFAYGKFGAAKRVEAESSNTKKIEASKEFWSHLDVLDNEEVKRPNCAEAN
LNYDTKIRRLKPQTEKKQDKVEK