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Spg028335 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028335
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold8:26985654..26987226
RNA-Seq ExpressionSpg028335
SyntenySpg028335
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8680640.1 hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus]1.2e-2332.74Show/hide
Query:  SEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNLQNF--PHA
        ++A++    K+   FE GF       G     +   +    W+ F   P SVNA VV+EFYANI K +   + VRG ++ ++PSAI   ++LQ+    HA
Subjt:  SEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNLQNF--PHA

Query:  AYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWKKKVG
         + E A + + +++ + +          + S Y      L+  A  W  F++ +++PT++++TVS  R+LL  +I  S  IDVG++IV +++ C  KK  
Subjt:  AYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWKKKVG

Query:  KLFFPNTITMLCKRVGVPEDEGDVIL
         L FPN IT LC++  V E+  D IL
Subjt:  KLFFPNTITMLCKRVGVPEDEGDVIL

KAE8695166.1 hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]1.6e-2328.53Show/hide
Query:  VAAASEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNL----
        V  A++  Y  +  R   FE GF      + +L   +   +  H W+ F   P  VNA +V+EFY+NI + +   V+VRG+ + ++P+AIN  + L    
Subjt:  VAAASEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNL----

Query:  -------QNFPHAAYN---EMAVAP----SNEQLSDAVRESAYLKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWK
               Q   H  Y    E    P    + +QL     +   L      W  F++ +++PT+H++TVS +R+LL  +IL    ID+GK+IV     C K
Subjt:  -------QNFPHAAYN---EMAVAP----SNEQLSDAVRESAYLKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWK

Query:  KKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARLQRMQE------------VRQGGLVYGINTILEQLALSASRQEFAE--RQALTFWNY
        ++   L FPN IT LC++  V E+  D IL     ++   +  L   +E            V     V   +T LEQ A+  + Q   +   + + ++ Y
Subjt:  KKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARLQRMQE------------VRQGGLVYGINTILEQLALSASRQEFAE--RQALTFWNY

Query:  VRTRDANLKKTL
         + RDA L   L
Subjt:  VRTRDANLKKTL

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]6.0e-2634.35Show/hide
Query:  ERLLKRRAEKGKSVAAASEAKYA-ELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDW
        +R+ ++  +  K    A+E +Y   +  R    E+GF        G LP F+   I  H W+ FCA PE     +VREFYAN+       V VRGV+V W
Subjt:  ERLLKRRAEKGKSVAAASEAKYA-ELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDW

Query:  SPSAINALYNLQN--FPHAAYNE-------------MAVAPSNEQLSDAVRESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRS
        S  AINA++ L +    H+ + E             +AVA +   +S    + AY      L   A  W  F++  +LPTTH  TVS++R+LL  ++L  
Subjt:  SPSAINALYNLQN--FPHAAYNE-------------MAVAPSNEQLSDAVRESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRS

Query:  LNIDVGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL
         +I+VG+MI +EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+
Subjt:  LNIDVGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.7e-2831.02Show/hide
Query:  RAEKGKSVAAASEAKYAELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINA
        +A K ++ AAA+  +   +  R    E+GF        G LP F+   I  H W+ FCA PE     +VREFYAN+   +   V VRGV+V WS  AINA
Subjt:  RAEKGKSVAAASEAKYAELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINA

Query:  LYNLQNFPHAAYNEMAVAPSNEQLSDAVR-------------ESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMI
        ++ L + P   ++E     + + L   +              + AY      L   A  W  F++ R+LPTTH  TVS++R+LL  ++L   +I+VG+MI
Subjt:  LYNLQNFPHAAYNEMAVAPSNEQLSDAVR-------------ESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMI

Query:  VNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL---------QRMQEVR---------QGGLVYGINTILEQLALSASRQ
         +EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+         Q+    R          G ++  +  + ++L+    +Q
Subjt:  VNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL---------QRMQEVR---------QGGLVYGINTILEQLALSASRQ

Query:  -------EFAERQALTFWNYVRTRDANLKKTL
               +   +Q   FW Y + RD  LKK L
Subjt:  -------EFAERQALTFWNYVRTRDANLKKTL

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]3.9e-2532.63Show/hide
Query:  ERLLKRRAEKGKSVAAASEAKYAE-------LLKRDFLFERGFSGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWS
        ER+ +  ++  K  + A+E +Y E        ++++F+++     + P F+   I  H W+LFCA PE     +VREFY N+   D   V +RGV+V  S
Subjt:  ERLLKRRAEKGKSVAAASEAKYAE-------LLKRDFLFERGFSGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWS

Query:  PSAINALYNLQN--FPHAAYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNID
          AIN +++L +    H+ + E    P    + + V           + AY      L   A  W  F++ R+LPTTH  TVS+E V L +++L   +I+
Subjt:  PSAINALYNLQN--FPHAAYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNID

Query:  VGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVP
        VG+MI  EI  C  +K G LFFP+ IT +C+    P
Subjt:  VGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVP

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)2.9e-2634.35Show/hide
Query:  ERLLKRRAEKGKSVAAASEAKYA-ELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDW
        +R+ ++  +  K    A+E +Y   +  R    E+GF        G LP F+   I  H W+ FCA PE     +VREFYAN+       V VRGV+V W
Subjt:  ERLLKRRAEKGKSVAAASEAKYA-ELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDW

Query:  SPSAINALYNLQN--FPHAAYNE-------------MAVAPSNEQLSDAVRESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRS
        S  AINA++ L +    H+ + E             +AVA +   +S    + AY      L   A  W  F++  +LPTTH  TVS++R+LL  ++L  
Subjt:  SPSAINALYNLQN--FPHAAYNE-------------MAVAPSNEQLSDAVRESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRS

Query:  LNIDVGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL
         +I+VG+MI +EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+
Subjt:  LNIDVGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL

A0A2P5BCG4 Uncharacterized protein (Fragment)8.1e-2931.02Show/hide
Query:  RAEKGKSVAAASEAKYAELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINA
        +A K ++ AAA+  +   +  R    E+GF        G LP F+   I  H W+ FCA PE     +VREFYAN+   +   V VRGV+V WS  AINA
Subjt:  RAEKGKSVAAASEAKYAELLKRDFLFERGF-------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINA

Query:  LYNLQNFPHAAYNEMAVAPSNEQLSDAVR-------------ESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMI
        ++ L + P   ++E     + + L   +              + AY      L   A  W  F++ R+LPTTH  TVS++R+LL  ++L   +I+VG+MI
Subjt:  LYNLQNFPHAAYNEMAVAPSNEQLSDAVR-------------ESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMI

Query:  VNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL---------QRMQEVR---------QGGLVYGINTILEQLALSASRQ
         +EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+         Q+    R          G ++  +  + ++L+    +Q
Subjt:  VNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARL---------QRMQEVR---------QGGLVYGINTILEQLALSASRQ

Query:  -------EFAERQALTFWNYVRTRDANLKKTL
               +   +Q   FW Y + RD  LKK L
Subjt:  -------EFAERQALTFWNYVRTRDANLKKTL

A0A2P5DAQ2 Uncharacterized protein1.9e-2532.63Show/hide
Query:  ERLLKRRAEKGKSVAAASEAKYAE-------LLKRDFLFERGFSGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWS
        ER+ +  ++  K  + A+E +Y E        ++++F+++     + P F+   I  H W+LFCA PE     +VREFY N+   D   V +RGV+V  S
Subjt:  ERLLKRRAEKGKSVAAASEAKYAE-------LLKRDFLFERGFSGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWS

Query:  PSAINALYNLQN--FPHAAYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNID
          AIN +++L +    H+ + E    P    + + V           + AY      L   A  W  F++ R+LPTTH  TVS+E V L +++L   +I+
Subjt:  PSAINALYNLQN--FPHAAYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNID

Query:  VGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVP
        VG+MI  EI  C  +K G LFFP+ IT +C+    P
Subjt:  VGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVP

A0A6A2YMQ9 Uncharacterized protein6.0e-2432.74Show/hide
Query:  SEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNLQNF--PHA
        ++A++    K+   FE GF       G     +   +    W+ F   P SVNA VV+EFYANI K +   + VRG ++ ++PSAI   ++LQ+    HA
Subjt:  SEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNLQNF--PHA

Query:  AYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWKKKVG
         + E A + + +++ + +          + S Y      L+  A  W  F++ +++PT++++TVS  R+LL  +I  S  IDVG++IV +++ C  KK  
Subjt:  AYNEMAVAPSNEQLSDAV----------RESAY------LKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWKKKVG

Query:  KLFFPNTITMLCKRVGVPEDEGDVIL
         L FPN IT LC++  V E+  D IL
Subjt:  KLFFPNTITMLCKRVGVPEDEGDVIL

A0A6A2ZUE4 Uncharacterized protein7.9e-2428.53Show/hide
Query:  VAAASEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNL----
        V  A++  Y  +  R   FE GF      + +L   +   +  H W+ F   P  VNA +V+EFY+NI + +   V+VRG+ + ++P+AIN  + L    
Subjt:  VAAASEAKYAELLKRDFLFERGF------SGDLPHFLRTGIADHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNL----

Query:  -------QNFPHAAYN---EMAVAP----SNEQLSDAVRESAYLKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWK
               Q   H  Y    E    P    + +QL     +   L      W  F++ +++PT+H++TVS +R+LL  +IL    ID+GK+IV     C K
Subjt:  -------QNFPHAAYN---EMAVAP----SNEQLSDAVRESAYLKREANTWMGFIRQRMLPTTHDSTVSRERVLLAFAILRSLNIDVGKMIVNEISGCWK

Query:  KKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARLQRMQE------------VRQGGLVYGINTILEQLALSASRQEFAE--RQALTFWNY
        ++   L FPN IT LC++  V E+  D IL     ++   +  L   +E            V     V   +T LEQ A+  + Q   +   + + ++ Y
Subjt:  KKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARLQRMQE------------VRQGGLVYGINTILEQLALSASRQEFAE--RQALTFWNY

Query:  VRTRDANLKKTL
         + RDA L   L
Subjt:  VRTRDANLKKTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGAAGTACCGAAACGTCGCCGCGTTAAGAGGAAAGCAGGCCGCGTTAGGGTTGTCCGAAATGATACCCCCTCTCCTCCAGCTACGGATTCTGAAAGAGAAAATGC
AGAGAAAGAAGAGAGTGAGAAGAAGGAAGCCAAAGAAAAAGCAAGAGAAGAGGAAGAGAAAAAGGCTGAGGAAGAGCGGTTGCTCAAGCGAAGGGCGGAAAAAGGCAAAA
GTGTTGCTGCAGCATCGGAAGCAAAATACGCTGAGCTGCTGAAAAGAGACTTCCTGTTTGAAAGAGGATTTAGCGGTGATCTTCCGCATTTTCTGAGGACCGGCATTGCA
GACCACGGCTGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAATATTGACAAAGAAGATGGTTTCCGGGTGATTGTTCG
AGGAGTCGAGGTAGACTGGAGTCCTAGTGCTATCAACGCACTGTATAACCTTCAGAATTTCCCCCATGCAGCATATAATGAGATGGCTGTAGCGCCATCTAATGAGCAGT
TAAGTGATGCTGTGCGGGAGTCAGCTTATCTGAAGAGGGAAGCGAACACGTGGATGGGATTTATCAGACAGAGGATGCTTCCAACGACGCATGACTCGACGGTCTCGAGG
GAACGGGTTCTTCTGGCTTTCGCGATTTTGCGGTCTCTCAACATTGATGTAGGGAAGATGATTGTTAATGAAATTTCTGGTTGTTGGAAGAAGAAGGTGGGGAAGCTGTT
TTTCCCGAATACCATTACCATGCTTTGCAAGAGGGTAGGGGTTCCAGAGGATGAAGGTGATGTTATTTTGTTTGACAAGGGGATCATCGACACGCCTAACTTGGCACGGC
TCCAGCGTATGCAGGAGGTACGTCAAGGAGGGCTTGTTTACGGCATCAACACGATTTTAGAACAACTCGCACTTTCGGCCAGCAGGCAGGAGTTTGCCGAGAGGCAAGCT
TTAACCTTCTGGAACTATGTTAGAACTCGTGATGCCAATCTGAAGAAGACGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGAAGTACCGAAACGTCGCCGCGTTAAGAGGAAAGCAGGCCGCGTTAGGGTTGTCCGAAATGATACCCCCTCTCCTCCAGCTACGGATTCTGAAAGAGAAAATGC
AGAGAAAGAAGAGAGTGAGAAGAAGGAAGCCAAAGAAAAAGCAAGAGAAGAGGAAGAGAAAAAGGCTGAGGAAGAGCGGTTGCTCAAGCGAAGGGCGGAAAAAGGCAAAA
GTGTTGCTGCAGCATCGGAAGCAAAATACGCTGAGCTGCTGAAAAGAGACTTCCTGTTTGAAAGAGGATTTAGCGGTGATCTTCCGCATTTTCTGAGGACCGGCATTGCA
GACCACGGCTGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAATATTGACAAAGAAGATGGTTTCCGGGTGATTGTTCG
AGGAGTCGAGGTAGACTGGAGTCCTAGTGCTATCAACGCACTGTATAACCTTCAGAATTTCCCCCATGCAGCATATAATGAGATGGCTGTAGCGCCATCTAATGAGCAGT
TAAGTGATGCTGTGCGGGAGTCAGCTTATCTGAAGAGGGAAGCGAACACGTGGATGGGATTTATCAGACAGAGGATGCTTCCAACGACGCATGACTCGACGGTCTCGAGG
GAACGGGTTCTTCTGGCTTTCGCGATTTTGCGGTCTCTCAACATTGATGTAGGGAAGATGATTGTTAATGAAATTTCTGGTTGTTGGAAGAAGAAGGTGGGGAAGCTGTT
TTTCCCGAATACCATTACCATGCTTTGCAAGAGGGTAGGGGTTCCAGAGGATGAAGGTGATGTTATTTTGTTTGACAAGGGGATCATCGACACGCCTAACTTGGCACGGC
TCCAGCGTATGCAGGAGGTACGTCAAGGAGGGCTTGTTTACGGCATCAACACGATTTTAGAACAACTCGCACTTTCGGCCAGCAGGCAGGAGTTTGCCGAGAGGCAAGCT
TTAACCTTCTGGAACTATGTTAGAACTCGTGATGCCAATCTGAAGAAGACGCTGTAG
Protein sequenceShow/hide protein sequence
MPEVPKRRRVKRKAGRVRVVRNDTPSPPATDSERENAEKEESEKKEAKEKAREEEEKKAEEERLLKRRAEKGKSVAAASEAKYAELLKRDFLFERGFSGDLPHFLRTGIA
DHGWELFCAKPESVNAQVVREFYANIDKEDGFRVIVRGVEVDWSPSAINALYNLQNFPHAAYNEMAVAPSNEQLSDAVRESAYLKREANTWMGFIRQRMLPTTHDSTVSR
ERVLLAFAILRSLNIDVGKMIVNEISGCWKKKVGKLFFPNTITMLCKRVGVPEDEGDVILFDKGIIDTPNLARLQRMQEVRQGGLVYGINTILEQLALSASRQEFAERQA
LTFWNYVRTRDANLKKTL