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Spg028351 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028351
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:25384499..25387112
RNA-Seq ExpressionSpg028351
SyntenySpg028351
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-2152.59Show/hide
Query:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHAIFRAK AGGPGG
Subjt:  WLHAIFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.9e-2251.54Show/hide
Query:  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPG
        SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG PG
Subjt:  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GDWCMSDPPEVRFELDPEIERTFRSRRREQ
        G      PP           RT R RR+ Q
Subjt:  GDWCMSDPPEVRFELDPEIERTFRSRRREQ

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-2148.95Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGG---DWCMSDPPEVRFELDPEIERTFRS
        WLHA+FRAK  GGPGG    W  S P   R +++ E ER  RS
Subjt:  WLHAIFRAKLAGGPGG---DWCMSDPPEVRFELDPEIERTFRS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]6.7e-2244.94Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL
        WLHA+FRAK  GGPGG     +    R +++   ER  RS     R       DP ++
Subjt:  WLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-2152.59Show/hide
Query:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHAIFRAK AGGPGG
Subjt:  WLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein7.2e-2252.59Show/hide
Query:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHAIFRAK AGGPGG
Subjt:  WLHAIFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein1.9e-2251.54Show/hide
Query:  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPG
        SI PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG PG
Subjt:  SIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GDWCMSDPPEVRFELDPEIERTFRSRRREQ
        G      PP           RT R RR+ Q
Subjt:  GDWCMSDPPEVRFELDPEIERTFRSRRREQ

A0A5A7UT17 CCHC-type domain-containing protein7.2e-2248.95Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGG---DWCMSDPPEVRFELDPEIERTFRS
        WLHA+FRAK  GGPGG    W  S P   R +++ E ER  RS
Subjt:  WLHAIFRAKLAGGPGG---DWCMSDPPEVRFELDPEIERTFRS

A0A5D3CJX3 CCHC-type domain-containing protein3.2e-2244.94Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL
        WLHA+FRAK  GGPGG     +    R +++   ER  RS     R       DP ++
Subjt:  WLHAIFRAKLAGGPGGDWCMSDPPEVRFELDPEIERTFRSRRREQRRNLNPMEDPPRL

A0A5D3DR18 Gag/pol protein7.2e-2252.59Show/hide
Query:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGG
        WLHAIFRAK AGGPGG
Subjt:  WLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTC
AGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTGGTGCATGAGCGATCCTCCAGAGGTG
AGATTCGAGCTTGATCCAGAAATAGAAAGAACATTCAGAAGCAGAAGGAGAGAGCAGCGAAGAAATCTAAATCCAATGGAAGACCCTCCGCGTCTTTCAGAAATTCCAGA
AGATCAAGTTAATCCTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGA
TACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTC
AGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTGGTGCATGAGCGATCCTCCAGAGGTG
AGATTCGAGCTTGATCCAGAAATAGAAAGAACATTCAGAAGCAGAAGGAGAGAGCAGCGAAGAAATCTAAATCCAATGGAAGACCCTCCGCGTCTTTCAGAAATTCCAGA
AGATCAAGTTAATCCTCAGTAG
Protein sequenceShow/hide protein sequence
MGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDWCMSDPPEV
RFELDPEIERTFRSRRREQRRNLNPMEDPPRLSEIPEDQVNPQ