; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028387 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028387
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:25698249..25699712
RNA-Seq ExpressionSpg028387
SyntenySpg028387
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2763.79Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR
        PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  G  +  +  +       S  LVEIELPVPD LPTSAESSR
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.4e-2357.48Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----
        +WPRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPL +R         SK WLYWACPT RRSV+L     
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----

Query:  -----VEIELPVPDTLPTSAESSRSSS
             VEIEL VPDTLPTSAESS S+S
Subjt:  -----VEIELPVPDTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.4e-2357.48Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----
        +WPRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPL +R         SK WLYWACPT RRSV+L     
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----

Query:  -----VEIELPVPDTLPTSAESSRSSS
             VEIEL VPDTLPTSAESS S+S
Subjt:  -----VEIELPVPDTLPTSAESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2763.79Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR
        PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  G  +  +  +       S  LVEIELPVPD LPTSAESSR
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-1549.57Show/hide
Query:  WPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESS
        WPRGNR  LQTGELDK              PLSTLSVLRDNDAV                                      VEIELP+PDTLPTSAESS
Subjt:  WPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESS

Query:  RSSSSTWLELYIESVHI
         S+SSTWLELY ESVH+
Subjt:  RSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.0e-2763.79Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR
        PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  G  +  +  +       S  LVEIELPVPD LPTSAESSR
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

A0A5A7T9P7 Gag/pol protein9.0e-1649.57Show/hide
Query:  WPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESS
        WPRGNR  LQTGELDK              PLSTLSVLRDNDAV                                      VEIELP+PDTLPTSAESS
Subjt:  WPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESS

Query:  RSSSSTWLELYIESVHI
         S+SSTWLELY ESVH+
Subjt:  RSSSSTWLELYIESVHI

A0A5A7VGQ5 Uncharacterized protein2.6e-2357.48Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----
        +WPRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPL +R         SK WLYWACPT RRSV+L     
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----

Query:  -----VEIELPVPDTLPTSAESSRSSS
             VEIEL VPDTLPTSAESS S+S
Subjt:  -----VEIELPVPDTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein2.6e-2357.48Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----
        +WPRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPL +R         SK WLYWACPT RRSV+L     
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLRQRRWECWAGGASKHWLYWACPTQRRSVIL-----

Query:  -----VEIELPVPDTLPTSAESSRSSS
             VEIEL VPDTLPTSAESS S+S
Subjt:  -----VEIELPVPDTLPTSAESSRSSS

A0A5D3BTP3 Reverse transcriptase1.0e-2763.79Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR
        PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  G  +  +  +       S  LVEIELPVPD LPTSAESSR
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTGGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGT
GCTGGGCGGGTGGGGCTAGTAAACATTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATATTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTGGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGT
GCTGGGCGGGTGGGGCTAGTAAACATTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATATTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MENRAQDFGAKQEDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGGASKHWLYWACPTQRRSVILVEIELPVPDTLPT
SAESSRSSSSTWLELYIESVHIVNVL