; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028391 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028391
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:26043647..26049537
RNA-Seq ExpressionSpg028391
SyntenySpg028391
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]5.3e-0829.71Show/hide
Query:  VLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAV
        V  L+ +G W +W +RN+ VH        D   WI ++  E++ AN +      +     +  + G EF ++ DA+F   +   G+G++IRD  G+  A 
Subjt:  VLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAV

Query:  LSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVLRSS
         SS    C++    EA+A L+G+ LA  + V  V+  S
Subjt:  LSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVLRSS

TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]3.0e-1132.67Show/hide
Query:  DEVKTTRSCAFWYRTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKAN-----PVGGPHTQTLAGVRRMIEEGEEFIMHSDAA
        D++      AF   T   D +EL+C+  W +W  RN   HS P  + ED   W  DY+ E++ AN     P G P  + +A +R    +   F +++DAA
Subjt:  DEVKTTRSCAFWYRTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKAN-----PVGGPHTQTLAGVRRMIEEGEEFIMHSDAA

Query:  FIGTTDSVGIGMVIRDRLGTLKAVLSSSSQFCTTPLGAEAKAVLDGVRLA
             + VG+G +IRD  G +          C  P  AEA A+L G+R+A
Subjt:  FIGTTDSVGIGMVIRDRLGTLKAVLSSSSQFCTTPLGAEAKAVLDGVRLA

TXG57115.1 hypothetical protein EZV62_018428 [Acer yangbiense]9.0e-0829.93Show/hide
Query:  LICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPH--TQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAVL
        L+C+  W IW   N +VH   +   +D   W  D++ +++ A  V        ++ G+     +   + M++DAA       VG G++IRD +G   +VL
Subjt:  LICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPH--TQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAVL

Query:  SSSSQFCT---TPLGAEAKAVLDGVRLARS---------LDVQCVLR
        +SSSQF     +P+ AEA A+  G+   R          LD Q V+R
Subjt:  SSSSQFCT---TPLGAEAKAVLDGVRLARS---------LDVQCVLR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.4e-0832.31Show/hide
Query:  ELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKA--NPVGGPHTQTL--AGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLK
        +L     WAIW DRN+  H   +  P  RC+WI  Y   Y +A  N    P   ++     R +        ++SDAA   T  S G+G++IRD  G L 
Subjt:  ELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKA--NPVGGPHTQTL--AGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLK

Query:  AVLSSSSQFCTTPLGAEAKAVLDGVRLARS
           S        PL AE + +L+ ++LA S
Subjt:  AVLSSSSQFCTTPLGAEAKAVLDGVRLARS

XP_023899473.1 uncharacterized protein LOC112011331 [Quercus suber]1.8e-0830.88Show/hide
Query:  DVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKA
        ++LEL+   AW +W  RN   H       ++        L  Y+ A+ +G PH +  A  R +  +   + +++DAA    + SVGIG+V+RD  G++ A
Subjt:  DVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKA

Query:  VLSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVL
         LS        PL AEAKA+ + +  A+ + +Q V+
Subjt:  VLSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVL

TrEMBL top hitse value%identityAlignment
A0A5A7VAW9 Uncharacterized protein9.7e-0852.17Show/hide
Query:  SRSKFHFTPEVTSCSLSSTDLIMNNLFMVQPLNRKSSRARRGRCAFIQDPESALKGTTSTIPTGSQKCV
        +RSK+HFTPE+TSCSL   D ++NN F VQP+N   SRA       +QD +S LKGTT  +   SQK V
Subjt:  SRSKFHFTPEVTSCSLSSTDLIMNNLFMVQPLNRKSSRARRGRCAFIQDPESALKGTTSTIPTGSQKCV

A0A5C7H0P0 Uncharacterized protein2.6e-0829.71Show/hide
Query:  VLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAV
        V  L+ +G W +W +RN+ VH        D   WI ++  E++ AN +      +     +  + G EF ++ DA+F   +   G+G++IRD  G+  A 
Subjt:  VLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAV

Query:  LSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVLRSS
         SS    C++    EA+A L+G+ LA  + V  V+  S
Subjt:  LSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVLRSS

A0A5C7HA98 CCHC-type domain-containing protein1.5e-1132.67Show/hide
Query:  DEVKTTRSCAFWYRTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKAN-----PVGGPHTQTLAGVRRMIEEGEEFIMHSDAA
        D++      AF   T   D +EL+C+  W +W  RN   HS P  + ED   W  DY+ E++ AN     P G P  + +A +R    +   F +++DAA
Subjt:  DEVKTTRSCAFWYRTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKAN-----PVGGPHTQTLAGVRRMIEEGEEFIMHSDAA

Query:  FIGTTDSVGIGMVIRDRLGTLKAVLSSSSQFCTTPLGAEAKAVLDGVRLA
             + VG+G +IRD  G +          C  P  AEA A+L G+R+A
Subjt:  FIGTTDSVGIGMVIRDRLGTLKAVLSSSSQFCTTPLGAEAKAVLDGVRLA

A0A5D3BN46 Uncharacterized protein9.7e-0857.14Show/hide
Query:  SKFHFTPEVTSCSLSSTDLIMNNLFMVQPLNRKSSRARRGRCAFIQDPESALKGTT
        SK+HFTPE+TSCSL  TD ++NN F VQP+N   SRA      ++QD +S LKGTT
Subjt:  SKFHFTPEVTSCSLSSTDLIMNNLFMVQPLNRKSSRARRGRCAFIQDPESALKGTT

A0A7N2MTJ9 Uncharacterized protein5.2e-0932.43Show/hide
Query:  WY-----RTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEE-FIMHSDAAFIGTTDSVGI
        WY     R+   +V +L+C+ AWA+W++RN   H        +   W   Y+ EYK A  +         GVR  I   E  F ++ D A      +VG+
Subjt:  WY-----RTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWIMDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEE-FIMHSDAAFIGTTDSVGI

Query:  GMVIRDRLGTLKAVLSSSSQFCTTPLG---AEAKAVLDGVRLARSLDV
        G++IRD  G L+A LS        PLG   AEA A   G+  AR + +
Subjt:  GMVIRDRLGTLKAVLSSSSQFCTTPLG---AEAKAVLDGVRLARSLDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTAAGTTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTTGTTCGTAACTGCAGCAGGTCAAAATTCCATTTTACTCCTGAAGTTACATCTT
GTTCCTTAAGTTCCACTGATCTTATAATGAACAATTTGTTTATGGTCCAACCATTAAACAGAAAATCCTCTCGTGCCAGAAGAGGACGGTGCGCCTTTATTCAAGACCCG
GAGTCAGCACTTAAGGGAACAACTTCTACTATCCCTACAGGCAGTCAAAAGTGTGTACAAACTAAGCATGATGACCAACCAAGAGGCTTCTGCCTCCTCATCAGTGTTGG
AAGCCTAATGGTGGAAAATGATTTGGAAGATGCGGGTACCAATTGCCCCTTGTGTTGGGATGAGGTGAAGACCACTAGATCATGCGCTTTTTGGTATCGGACAAAGTGGG
GGGATGTTTTAGAGCTGATTTGCCTTGGTGCATGGGCTATTTGGAATGATCGTAATAATCAGGTGCATAGTCGACCAATTCCAAAACCGGAGGATCGTTGTGATTGGATT
ATGGATTACCTGGCAGAATATAAAAAGGCTAACCCCGTGGGTGGTCCTCATACGCAAACACTTGCGGGTGTTCGACGAATGATTGAGGAAGGAGAGGAATTTATTATGCA
TTCTGATGCTGCTTTTATTGGGACCACCGACTCTGTTGGCATTGGAATGGTGATTCGTGATAGATTGGGGACTCTAAAGGCAGTGTTGAGTTCATCATCCCAGTTTTGCA
CTACTCCCTTAGGTGCGGAAGCGAAAGCGGTTTTGGATGGGGTTCGTCTAGCAAGATCATTGGATGTACAATGTGTGTTACGGTCTTCTTTGACTCTCTATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTAAGTTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTTGTTCGTAACTGCAGCAGGTCAAAATTCCATTTTACTCCTGAAGTTACATCTT
GTTCCTTAAGTTCCACTGATCTTATAATGAACAATTTGTTTATGGTCCAACCATTAAACAGAAAATCCTCTCGTGCCAGAAGAGGACGGTGCGCCTTTATTCAAGACCCG
GAGTCAGCACTTAAGGGAACAACTTCTACTATCCCTACAGGCAGTCAAAAGTGTGTACAAACTAAGCATGATGACCAACCAAGAGGCTTCTGCCTCCTCATCAGTGTTGG
AAGCCTAATGGTGGAAAATGATTTGGAAGATGCGGGTACCAATTGCCCCTTGTGTTGGGATGAGGTGAAGACCACTAGATCATGCGCTTTTTGGTATCGGACAAAGTGGG
GGGATGTTTTAGAGCTGATTTGCCTTGGTGCATGGGCTATTTGGAATGATCGTAATAATCAGGTGCATAGTCGACCAATTCCAAAACCGGAGGATCGTTGTGATTGGATT
ATGGATTACCTGGCAGAATATAAAAAGGCTAACCCCGTGGGTGGTCCTCATACGCAAACACTTGCGGGTGTTCGACGAATGATTGAGGAAGGAGAGGAATTTATTATGCA
TTCTGATGCTGCTTTTATTGGGACCACCGACTCTGTTGGCATTGGAATGGTGATTCGTGATAGATTGGGGACTCTAAAGGCAGTGTTGAGTTCATCATCCCAGTTTTGCA
CTACTCCCTTAGGTGCGGAAGCGAAAGCGGTTTTGGATGGGGTTCGTCTAGCAAGATCATTGGATGTACAATGTGTGTTACGGTCTTCTTTGACTCTCTATCTTTAA
Protein sequenceShow/hide protein sequence
MGSWEHNRTRWNSLLPDFREADESGVTDTREGLTSRYWSKFRGHRKYVCSEKSATVVRNCSRSKFHFTPEVTSCSLSSTDLIMNNLFMVQPLNRKSSRARRGRCAFIQDP
ESALKGTTSTIPTGSQKCVQTKHDDQPRGFCLLISVGSLMVENDLEDAGTNCPLCWDEVKTTRSCAFWYRTKWGDVLELICLGAWAIWNDRNNQVHSRPIPKPEDRCDWI
MDYLAEYKKANPVGGPHTQTLAGVRRMIEEGEEFIMHSDAAFIGTTDSVGIGMVIRDRLGTLKAVLSSSSQFCTTPLGAEAKAVLDGVRLARSLDVQCVLRSSLTLYL