; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028425 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028425
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:12317941..12321360
RNA-Seq ExpressionSpg028425
SyntenySpg028425
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48734.1 hypothetical protein EZV62_024609 [Acer yangbiense]2.1e-2638.89Show/hide
Query:  LDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLV----------HLGGKIGVVEKVGGSNENDW
        L LC+VGKVL++K +N E F+ V+   W+V  +  +E   EN+F+  F+ + ++ RVL  GPW+FD  L+           LG  IG VE++      D 
Subjt:  LDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLV----------HLGGKIGVVEKVGGSNENDW

Query:  IGPILRIRVRLRLDRPLRRGFHMQD-DDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQYGEWLRVG
         G  +R+RV + +D+PLRR   +    DG +S   + YERL D C  CG LGH   EC   GASS    E  +G WL+ G
Subjt:  IGPILRIRVRLRLDRPLRRGFHMQD-DDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQYGEWLRVG

TXG51459.1 hypothetical protein EZV62_023983 [Acer yangbiense]3.2e-2733.18Show/hide
Query:  DLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHLGGKIGVVEKVGGSNENDWIGPILRIRV
        ++DLC+VGK+LSSK+VN EAF+N++   W    +  +E  G NIF+  F  + E++R+   GPW FD+SL+ L    G V  +   +++ W G  ++++V
Subjt:  DLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHLGGKIGVVEKVGGSNENDWIGPILRIRV

Query:  RLRLDRPLRRGFHMQ-DDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGV-GED-QYGEWLRVGAFLGESIRRDLDQGGVKDSWKQSVVAP
        ++ + +PL+R   ++ D   N     + YERLP FC+ CG +GH+ + C    A    + GE  +YG W+R      + +R D     +K   K      
Subjt:  RLRLDRPLRRGFHMQ-DDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGV-GED-QYGEWLRVGAFLGESIRRDLDQGGVKDSWKQSVVAP

Query:  KPVSGEAEICM
        +  SG  E+C+
Subjt:  KPVSGEAEICM

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.5e-4440.89Show/hide
Query:  EEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSL------------
        +E E V        L A ++ LCVV K+ +SK+++ EA R+VM+S WRVHN+TR EP G NI+VI F++  EKSRVL +GPW F++SL            
Subjt:  EEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSL------------

Query:  -------------VH--------------LGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGH
                     +H              LG K+G VE++ G   + W GP +R+RV++ + +PLRRG  +++ DG D WCP+ YE+LPDFC+ CG +GH
Subjt:  -------------VH--------------LGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGH

Query:  SRRECEGVGASSSGVGEDQYGEWLR
        S RECE      +    +QYG+WLR
Subjt:  SRRECEGVGASSSGVGEDQYGEWLR

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]3.0e-4139.82Show/hide
Query:  MDDLVKKGKSW-LIGEEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFD
        MDD+ K  +++ LI EE + +        L   ++ LC VGK+  SK++  EAF +VM+  W++HN+TR+E AG NI+VI F+T  EK RV   GPW FD
Subjt:  MDDLVKKGKSW-LIGEEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLV---------------------------------------HLGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLY
        +SL+                                        LG ++G VE+V G +  DW+ P L +RV++ + +PLRRG  ++  DG D WCP+ Y
Subjt:  RSLV---------------------------------------HLGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        ERLPDFC+GCGC+GHS RE E
Subjt:  ERLPDFCFGCGCLGHSRRECE

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]1.6e-2635.15Show/hide
Query:  VPSSLPATDL---DLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHL-------------GGK
        V SSL  +++   + C+V  +L+ +  N EA +N+MR  W+       +  G N+F+++F    +K R+L  GPW+FD  LV L             G K
Subjt:  VPSSLPATDL---DLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHL-------------GGK

Query:  IGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQ--YGEWLRVGAFLG
        IG+VE+V G       G  LRIRVR+ + +PL RG  ++       W    YERLP+FC+ CG LGH +++CE +  +      DQ  +G WL VG  +G
Subjt:  IGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQ--YGEWLRVGAFLG

Query:  ES
         +
Subjt:  ES

TrEMBL top hitse value%identityAlignment
A0A5C7GVA6 CCHC-type domain-containing protein1.0e-2638.89Show/hide
Query:  LDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLV----------HLGGKIGVVEKVGGSNENDW
        L LC+VGKVL++K +N E F+ V+   W+V  +  +E   EN+F+  F+ + ++ RVL  GPW+FD  L+           LG  IG VE++      D 
Subjt:  LDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLV----------HLGGKIGVVEKVGGSNENDW

Query:  IGPILRIRVRLRLDRPLRRGFHMQD-DDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQYGEWLRVG
         G  +R+RV + +D+PLRR   +    DG +S   + YERL D C  CG LGH   EC   GASS    E  +G WL+ G
Subjt:  IGPILRIRVRLRLDRPLRRGFHMQD-DDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQYGEWLRVG

A0A5C7H421 CCHC-type domain-containing protein1.6e-2733.18Show/hide
Query:  DLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHLGGKIGVVEKVGGSNENDWIGPILRIRV
        ++DLC+VGK+LSSK+VN EAF+N++   W    +  +E  G NIF+  F  + E++R+   GPW FD+SL+ L    G V  +   +++ W G  ++++V
Subjt:  DLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHLGGKIGVVEKVGGSNENDWIGPILRIRV

Query:  RLRLDRPLRRGFHMQ-DDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGV-GED-QYGEWLRVGAFLGESIRRDLDQGGVKDSWKQSVVAP
        ++ + +PL+R   ++ D   N     + YERLP FC+ CG +GH+ + C    A    + GE  +YG W+R      + +R D     +K   K      
Subjt:  RLRLDRPLRRGFHMQ-DDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGV-GED-QYGEWLRVGAFLGESIRRDLDQGGVKDSWKQSVVAP

Query:  KPVSGEAEICM
        +  SG  E+C+
Subjt:  KPVSGEAEICM

A0A6J1D765 uncharacterized protein LOC1110179024.1e-4440.89Show/hide
Query:  EEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSL------------
        +E E V        L A ++ LCVV K+ +SK+++ EA R+VM+S WRVHN+TR EP G NI+VI F++  EKSRVL +GPW F++SL            
Subjt:  EEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSL------------

Query:  -------------VH--------------LGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGH
                     +H              LG K+G VE++ G   + W GP +R+RV++ + +PLRRG  +++ DG D WCP+ YE+LPDFC+ CG +GH
Subjt:  -------------VH--------------LGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGH

Query:  SRRECEGVGASSSGVGEDQYGEWLR
        S RECE      +    +QYG+WLR
Subjt:  SRRECEGVGASSSGVGEDQYGEWLR

A0A6J1DVS4 uncharacterized protein LOC1110235551.5e-4139.82Show/hide
Query:  MDDLVKKGKSW-LIGEEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFD
        MDD+ K  +++ LI EE + +        L   ++ LC VGK+  SK++  EAF +VM+  W++HN+TR+E AG NI+VI F+T  EK RV   GPW FD
Subjt:  MDDLVKKGKSW-LIGEEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFD

Query:  RSLV---------------------------------------HLGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLY
        +SL+                                        LG ++G VE+V G +  DW+ P L +RV++ + +PLRRG  ++  DG D WCP+ Y
Subjt:  RSLV---------------------------------------HLGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLY

Query:  ERLPDFCFGCGCLGHSRRECE
        ERLPDFC+GCGC+GHS RE E
Subjt:  ERLPDFCFGCGCLGHSRRECE

A0A6P9EID8 uncharacterized protein LOC1183488567.8e-2735.15Show/hide
Query:  VPSSLPATDL---DLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHL-------------GGK
        V SSL  +++   + C+V  +L+ +  N EA +N+MR  W+       +  G N+F+++F    +K R+L  GPW+FD  LV L             G K
Subjt:  VPSSLPATDL---DLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFRTRGEKSRVLGTGPWAFDRSLVHL-------------GGK

Query:  IGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQ--YGEWLRVGAFLG
        IG+VE+V G       G  LRIRVR+ + +PL RG  ++       W    YERLP+FC+ CG LGH +++CE +  +      DQ  +G WL VG  +G
Subjt:  IGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGEDQ--YGEWLRVGAFLG

Query:  ES
         +
Subjt:  ES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCTTCCCTTCGTGGTCTGAAGGTTGTGGGTTCTTCGGGGCGCCTTCTCGTGAGCTTGGATGAAGGGAGATTTACGAGGATGGATGACTTGGTGAAGAAGGGGAA
GTCGTGGCTTATCGGGGAGGAGGCGGAGGTGGTACGCCCAGGTGCAGTACCGTCTTCTCTGCCGGCGACAGATTTGGACTTATGTGTGGTGGGTAAGGTCTTATCGTCCA
AGCAGGTCAATCCAGAGGCCTTTCGCAATGTGATGCGGTCGGCATGGAGAGTTCACAATGCGACACGTGTGGAGCCGGCTGGAGAGAATATCTTTGTGATTCAGTTTCGT
ACCAGGGGTGAAAAGTCGAGAGTTCTGGGTACTGGTCCTTGGGCCTTTGATCGGTCCCTTGTCCATCTGGGAGGCAAGATTGGGGTGGTTGAGAAAGTGGGCGGTTCAAA
TGAGAATGATTGGATAGGCCCTATACTGCGGATTAGAGTTCGTCTTCGGTTGGACCGACCACTCCGAAGGGGGTTCCATATGCAGGACGACGATGGGAATGATTCTTGGT
GTCCAGTATTGTATGAGCGTCTTCCGGATTTCTGTTTTGGATGTGGATGTTTAGGTCACTCGAGGCGGGAATGTGAAGGTGTTGGGGCGAGTTCTTCGGGAGTGGGGGAG
GATCAATATGGTGAGTGGCTGAGAGTAGGTGCTTTTCTTGGGGAGAGTATCCGACGGGATCTAGATCAGGGAGGTGTAAAGGACAGTTGGAAGCAGTCCGTAGTGGCCCC
CAAGCCTGTTTCAGGAGAGGCTGAGATTTGCATGGTGGAGGGAGGGAAGGAAGCTCGGGTGGAGGGCAGTGAGAAAGGTAAACAGAGGGTGGGGCATGGTGCTTCTGAAC
CATGGTACACCTATGTGGAGGGGGAGGCTATGGTGGTGGATAAGGTGGATATGGTGCAGGGTAGAGAGGATCCTCCCAGAACTCTGGATTTTTTGGAATGTGTTTCAACT
CCAATGACGCTCTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCTTCCCTTCGTGGTCTGAAGGTTGTGGGTTCTTCGGGGCGCCTTCTCGTGAGCTTGGATGAAGGGAGATTTACGAGGATGGATGACTTGGTGAAGAAGGGGAA
GTCGTGGCTTATCGGGGAGGAGGCGGAGGTGGTACGCCCAGGTGCAGTACCGTCTTCTCTGCCGGCGACAGATTTGGACTTATGTGTGGTGGGTAAGGTCTTATCGTCCA
AGCAGGTCAATCCAGAGGCCTTTCGCAATGTGATGCGGTCGGCATGGAGAGTTCACAATGCGACACGTGTGGAGCCGGCTGGAGAGAATATCTTTGTGATTCAGTTTCGT
ACCAGGGGTGAAAAGTCGAGAGTTCTGGGTACTGGTCCTTGGGCCTTTGATCGGTCCCTTGTCCATCTGGGAGGCAAGATTGGGGTGGTTGAGAAAGTGGGCGGTTCAAA
TGAGAATGATTGGATAGGCCCTATACTGCGGATTAGAGTTCGTCTTCGGTTGGACCGACCACTCCGAAGGGGGTTCCATATGCAGGACGACGATGGGAATGATTCTTGGT
GTCCAGTATTGTATGAGCGTCTTCCGGATTTCTGTTTTGGATGTGGATGTTTAGGTCACTCGAGGCGGGAATGTGAAGGTGTTGGGGCGAGTTCTTCGGGAGTGGGGGAG
GATCAATATGGTGAGTGGCTGAGAGTAGGTGCTTTTCTTGGGGAGAGTATCCGACGGGATCTAGATCAGGGAGGTGTAAAGGACAGTTGGAAGCAGTCCGTAGTGGCCCC
CAAGCCTGTTTCAGGAGAGGCTGAGATTTGCATGGTGGAGGGAGGGAAGGAAGCTCGGGTGGAGGGCAGTGAGAAAGGTAAACAGAGGGTGGGGCATGGTGCTTCTGAAC
CATGGTACACCTATGTGGAGGGGGAGGCTATGGTGGTGGATAAGGTGGATATGGTGCAGGGTAGAGAGGATCCTCCCAGAACTCTGGATTTTTTGGAATGTGTTTCAACT
CCAATGACGCTCTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCTAG
Protein sequenceShow/hide protein sequence
MRASLRGLKVVGSSGRLLVSLDEGRFTRMDDLVKKGKSWLIGEEAEVVRPGAVPSSLPATDLDLCVVGKVLSSKQVNPEAFRNVMRSAWRVHNATRVEPAGENIFVIQFR
TRGEKSRVLGTGPWAFDRSLVHLGGKIGVVEKVGGSNENDWIGPILRIRVRLRLDRPLRRGFHMQDDDGNDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSSGVGE
DQYGEWLRVGAFLGESIRRDLDQGGVKDSWKQSVVAPKPVSGEAEICMVEGGKEARVEGSEKGKQRVGHGASEPWYTYVEGEAMVVDKVDMVQGREDPPRTLDFLECVST
PMTLYRSSTRQLAIPSSVTGVHQYTMI