; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:12358408..12362253
RNA-Seq ExpressionSpg028429
SyntenySpg028429
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.0e-1729.76Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E   KR+     +   DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH 
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV
        DHGH+T++C  LK+E+E LI  GYLKE+              EP                    +++  G  D++P  +   ++        G KR    
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV

Query:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH
                        P  R  R ++ + +V  ++   RP +I F +++A H
Subjt:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.9e-2030.95Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV
        DHGH+T++C  LK+E+E LIR GYLKE+              EP                    +++  G  D++P  +   ++        G KR   V
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV

Query:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH
                           R  R ++ + +V   +   RP +I F +++A H
Subjt:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]3.0e-2044.03Show/hide
Query:  EKYMSAEEL------LKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQ
        +KYMSAEE       L+ K+++++ +RS      ++ +K+ R          + D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +
Subjt:  EKYMSAEEL------LKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQ

Query:  YCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF
        YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+
Subjt:  YCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.8e-1744.53Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEF
        DH H+T++   LK+E+E LIR GYL+E+
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEF

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]8.9e-1741.89Show/hide
Query:  DPPFTEEKYMSAEELL-----KSKKSEREHKRSSSSDHDTRKDKKQRT------DDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKL
        D  +   KYM+AE+ L     K KK ER+         DTR+D+ ++        D  R RP  G    +F  +TP + P +Q+LM+I+N   L  P KL
Subjt:  DPPFTEEKYMSAEELL-----KSKKSEREHKRSSSSDHDTRKDKKQRT------DDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKL

Query:  KSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTK
        K NP+ R + +YC FHRDHGH T NC  LK +IEALIR G L+ F +K
Subjt:  KSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTK

TrEMBL top hitse value%identityAlignment
A0A2N9EKU0 Ribonuclease H1.6e-1634.39Show/hide
Query:  KKLGNPQGDLQNSRDLGDQDLEELIDQVDPPFT-------EEKYMSAEELL------KSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKK
        ++ G P   L N +    + L   + + DPP T        ++YM+ EE L        KK + +H    +  H+TR   ++  +     R  RG + ++
Subjt:  KKLGNPQGDLQNSRDLGDQDLEELIDQVDPPFT-------EEKYMSAEELL------KSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKK

Query:  FERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAH
        F R+TP + P + I M+IRN   L  P KL ++PD R + +YC FHRDHGH+T NC  LK +IE LI+ G L+ F  K  T R+   A+
Subjt:  FERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAH

A0A6J1CNT2 uncharacterized protein LOC1110128051.9e-1729.76Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E   KR+     +   DK Q +    R R  + D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH 
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV
        DHGH+T++C  LK+E+E LI  GYLKE+              EP                    +++  G  D++P  +   ++        G KR    
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV

Query:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH
                        P  R  R ++ + +V  ++   RP +I F +++A H
Subjt:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH

A0A6J1DWY0 uncharacterized protein LOC1110252931.9e-2030.95Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHR
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV
        DHGH+T++C  LK+E+E LIR GYLKE+              EP                    +++  G  D++P  +   ++        G KR   V
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPGLPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGV

Query:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH
                           R  R ++ + +V   +   RP +I F +++A H
Subjt:  RGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAH

A0A6J1DYL6 uncharacterized protein LOC1110257853.3e-1744.53Show/hide
Query:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR
        ++YMSA E   SK+ E + KR+     +   DK Q +    R R  + D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHR
Subjt:  EKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEF
        DH H+T++   LK+E+E LIR GYL+E+
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEF

A0A6J1DZ52 uncharacterized protein LOC1110256121.4e-2044.03Show/hide
Query:  EKYMSAEEL------LKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQ
        +KYMSAEE       L+ K+++++ +RS      ++ +K+ R          + D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +
Subjt:  EKYMSAEEL------LKSKKSEREHKRSSSSDHDTRKDKKQRTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQ

Query:  YCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF
        YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+
Subjt:  YCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCCAGAGGCAAAACCGGCAAGTGGGACGGGCAAGCCCGACCCCATGCTCGGCCTCGGCCCAAGGCCGAGGCCGAGGCTCATGGTCGGCCTCGGCCGACCCTCGG
CCTGCTCGCGCGGGTCGAGCCCGTCCGACTCCGTTTGGTCCCTTCCGCCTCTGGCCGCCCCAGTTTCGCCTGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCA
GGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGACGAATAGGCCGAGGAGCCGAGGCCGAGGAGAGGAT
TCTGAAGCCAAAATTGCCGCCCTTGAGGATAAGGTGAAGGGAATGAATCAGAGTTTGTCCAGAATACTCAAAATCCTAGATAAACCCGGCCCTAGCACCAAACTCCATGA
GGGGGGCTTGATTAGAGACCCAAAGAAGGGGAAGGAGCCAGTCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCA
GGGGGCTGAAGCATGCAGAGCGCACAGTACTGAGGAGCCCAGAGCCAAGTACCAGCCGTCGAATAGACCTGAGAAATCTGATCGAGGAAAAGCGCAGGAGTGCCAAAACT
GCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAGGATAATCTCCCTTGGAAGACTGAGCT
TCTGAACGCACTAAAGAAGCTCGGAAATCCTCAGGGAGACCTGCAGAATTCAAGGGACCTTGGAGACCAAGACTTGGAAGAACTAATTGACCAAGTCGACCCGCCCTTCA
CAGAAGAAAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGACACTAGGAAGGACAAAAAGCAG
CGGACCGACGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATTTTGATGGAGATAAG
GAATACAAACCTGCTCAACATGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCTTCCACGCTTAGAGCCCACGCCACTGCTCACGAGCCTGGA
CTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATGTAAGTCAAAGCTCACCTGGCGGAGGCCGAGACCGAGCACCTCTTGCCAAAACCGAGCA
CCTCTTGTCGAGGCTGAGCACAAACTTTAAAGGGGCGAAGCGCCCAGTGGGGGTTCGGGGGCAACGCCCCCTAAGCAAAATTAGAAAAATGCTCGACCTCTTCCCGAGGC
CGAGGCCGACCAGACAAGCTAAAAGGGAGATAGATGTGCTCGGCCTCTTCCCGAGGCCGAGGCCTACTAGCATCACTTTTGATGACAACCAGGCTGCTCATAGAAATAGG
GCTGAGAGATGGACCCCAGAGGCGAAATCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCTGACCCCATGCTCGGCCTCGGCCATGGGCCGAGCCCG
TCCGACTCCGTTTGGTCCCTTCCGCCTCTGGCCGCCTCGGTTCCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCCAGAGGCAAAACCGGCAAGTGGGACGGGCAAGCCCGACCCCATGCTCGGCCTCGGCCCAAGGCCGAGGCCGAGGCTCATGGTCGGCCTCGGCCGACCCTCGG
CCTGCTCGCGCGGGTCGAGCCCGTCCGACTCCGTTTGGTCCCTTCCGCCTCTGGCCGCCCCAGTTTCGCCTGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCA
GGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGACGAATAGGCCGAGGAGCCGAGGCCGAGGAGAGGAT
TCTGAAGCCAAAATTGCCGCCCTTGAGGATAAGGTGAAGGGAATGAATCAGAGTTTGTCCAGAATACTCAAAATCCTAGATAAACCCGGCCCTAGCACCAAACTCCATGA
GGGGGGCTTGATTAGAGACCCAAAGAAGGGGAAGGAGCCAGTCGAGTACGTGGATGAATCAGAGACAGAATCGAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCA
GGGGGCTGAAGCATGCAGAGCGCACAGTACTGAGGAGCCCAGAGCCAAGTACCAGCCGTCGAATAGACCTGAGAAATCTGATCGAGGAAAAGCGCAGGAGTGCCAAAACT
GCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAGGATAATCTCCCTTGGAAGACTGAGCT
TCTGAACGCACTAAAGAAGCTCGGAAATCCTCAGGGAGACCTGCAGAATTCAAGGGACCTTGGAGACCAAGACTTGGAAGAACTAATTGACCAAGTCGACCCGCCCTTCA
CAGAAGAAAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGTCAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGACACTAGGAAGGACAAAAAGCAG
CGGACCGACGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATTTTGATGGAGATAAG
GAATACAAACCTGCTCAACATGCCTAGAAAGCTGAAGTCAAACCCTGATAACAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGAAACGGATACCTGAAGGAGTTCACCACTAAGGCTTCCACGCTTAGAGCCCACGCCACTGCTCACGAGCCTGGA
CTACCGAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATGTAAGTCAAAGCTCACCTGGCGGAGGCCGAGACCGAGCACCTCTTGCCAAAACCGAGCA
CCTCTTGTCGAGGCTGAGCACAAACTTTAAAGGGGCGAAGCGCCCAGTGGGGGTTCGGGGGCAACGCCCCCTAAGCAAAATTAGAAAAATGCTCGACCTCTTCCCGAGGC
CGAGGCCGACCAGACAAGCTAAAAGGGAGATAGATGTGCTCGGCCTCTTCCCGAGGCCGAGGCCTACTAGCATCACTTTTGATGACAACCAGGCTGCTCATAGAAATAGG
GCTGAGAGATGGACCCCAGAGGCGAAATCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCTTTTGGCCTGACCCCATGCTCGGCCTCGGCCATGGGCCGAGCCCG
TCCGACTCCGTTTGGTCCCTTCCGCCTCTGGCCGCCTCGGTTCCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAA
Protein sequenceShow/hide protein sequence
MDPRGKTGKWDGQARPHARPRPKAEAEAHGRPRPTLGLLARVEPVRLRLVPSASGRPSFACIGGGVASTTPVCRFSLLQATSSPALKQIHCRLSRGAKTNRPRSRGRGED
SEAKIAALEDKVKGMNQSLSRILKILDKPGPSTKLHEGGLIRDPKKGKEPVEYVDESETESKGKKTNSATSKVRGLKHAERTVLRSPEPSTSRRIDLRNLIEEKRRSAKT
AESEARAAEAEARAAEAEARLAEAEAKKDNLPWKTELLNALKKLGNPQGDLQNSRDLGDQDLEELIDQVDPPFTEEKYMSAEELLKSKKSEREHKRSSSSDHDTRKDKKQ
RTDDHGRGRPDRGDYLKKFERYTPTSIPQEQILMEIRNTNLLNMPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKASTLRAHATAHEPG
LPSLPHLRAQTLAQALHVSQSSPGGGRDRAPLAKTEHLLSRLSTNFKGAKRPVGVRGQRPLSKIRKMLDLFPRPRPTRQAKREIDVLGLFPRPRPTSITFDDNQAAHRNR
AERWTPEAKSASGTGQDRRGRAFGLTPCSASAMGRARPTPFGPFRLWPPRFRLVCPETPPNS