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Spg028438 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028438
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold7:11532602..11533226
RNA-Seq ExpressionSpg028438
SyntenySpg028438
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-0734.13Show/hide
Query:  LIPLRGEENCTTPTARAGAAGVRPSRTPQRIRLFMGNVTER-----------------------------RKELYTELQTIPGVSLEDDLVIALALLVHS
        L P  GE+  +TPT+ A  AG   SR  ++ R + G++ +                               K LY +LQTIPG+ ++D L++A +LL   
Subjt:  LIPLRGEENCTTPTARAGAAGVRPSRTPQRIRLFMGNVTER-----------------------------RKELYTELQTIPGVSLEDDLVIALALLVHS

Query:  SMLTHFMDFPPEWKYDYCM-LLGRAP
        +ML  F+D+P EWKY  CM +LGR P
Subjt:  SMLTHFMDFPPEWKYDYCM-LLGRAP
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]6.4e-0837.9Show/hide
Query:  LIPLRGEENCTTPTARAGAAGV-RPSR-----TPQRIRLFMGNVTERRKE---------------------LYTELQTIPGVSLEDDLVIALALLVHSSM
        L P  GE+  +TPT+ A  AG+ RPS+     +   +  F  ++ E  KE                     LYTELQTIPG+ ++D L++A +LL   +M
Subjt:  LIPLRGEENCTTPTARAGAAGV-RPSR-----TPQRIRLFMGNVTERRKE---------------------LYTELQTIPGVSLEDDLVIALALLVHSSM

Query:  LTHFMDFPPEWKYDYCM-LLGRAP
        L  F+D+P EWKY  CM +LGR P
Subjt:  LTHFMDFPPEWKYDYCM-LLGRAP
TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein4.5e-0734.13Show/hide
Query:  LIPLRGEENCTTPTARAGAAGVRPSRTPQRIRLFMGNVTER-----------------------------RKELYTELQTIPGVSLEDDLVIALALLVHS
        L P  GE+  +TPT+ A  AG   SR  ++ R + G++ +                               K LY +LQTIPG+ ++D L++A +LL   
Subjt:  LIPLRGEENCTTPTARAGAAGVRPSRTPQRIRLFMGNVTER-----------------------------RKELYTELQTIPGVSLEDDLVIALALLVHS

Query:  SMLTHFMDFPPEWKYDYCM-LLGRAP
        +ML  F+D+P EWKY  CM +LGR P
Subjt:  SMLTHFMDFPPEWKYDYCM-LLGRAP
A0A5A7VG45 Retrotransposon protein3.1e-0837.9Show/hide
Query:  LIPLRGEENCTTPTARAGAAGV-RPSR-----TPQRIRLFMGNVTERRKE---------------------LYTELQTIPGVSLEDDLVIALALLVHSSM
        L P  GE+  +TPT+ A  AG+ RPS+     +   +  F  ++ E  KE                     LYTELQTIPG+ ++D L++A +LL   +M
Subjt:  LIPLRGEENCTTPTARAGAAGV-RPSR-----TPQRIRLFMGNVTERRKE---------------------LYTELQTIPGVSLEDDLVIALALLVHSSM

Query:  LTHFMDFPPEWKYDYCM-LLGRAP
        L  F+D+P EWKY  CM +LGR P
Subjt:  LTHFMDFPPEWKYDYCM-LLGRAP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAGCACCAGCAGCTCAAACTTTCGCTGTTGGTGTACTGCAGTTGTCCTCCCTCGAAGTGGGATCAAGAACAAGTGGACTATGATGTATATATGCCTGAACGTGT
AATTAGGTGGACTATGATGTATATACGCTTGTTCTTGATCCCACTTCGGGGGGAGGAGAACTGCACTACACCAACAGCGAGAGCTGGAGCTGCTGGTGTTAGGCCATCAC
GAACACCACAAAGGATAAGACTATTTATGGGAAATGTGACTGAGCGTCGCAAGGAGCTATATACGGAGCTGCAAACCATACCAGGAGTTTCGCTGGAGGACGACTTAGTC
ATCGCACTGGCTTTACTGGTTCATTCGAGCATGCTGACACATTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCTACTTGGTAGGGCACCTCGACAGTC
GAGTCAGCCTGATCCTCCACATTCTGCAGTCGGAGACTTAACGCTACCCATCTTATCTTTTTATGCAATCTCACTTTATTTTGTTCAGATTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCAGCACCAGCAGCTCAAACTTTCGCTGTTGGTGTACTGCAGTTGTCCTCCCTCGAAGTGGGATCAAGAACAAGTGGACTATGATGTATATATGCCTGAACGTGT
AATTAGGTGGACTATGATGTATATACGCTTGTTCTTGATCCCACTTCGGGGGGAGGAGAACTGCACTACACCAACAGCGAGAGCTGGAGCTGCTGGTGTTAGGCCATCAC
GAACACCACAAAGGATAAGACTATTTATGGGAAATGTGACTGAGCGTCGCAAGGAGCTATATACGGAGCTGCAAACCATACCAGGAGTTTCGCTGGAGGACGACTTAGTC
ATCGCACTGGCTTTACTGGTTCATTCGAGCATGCTGACACATTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCTACTTGGTAGGGCACCTCGACAGTC
GAGTCAGCCTGATCCTCCACATTCTGCAGTCGGAGACTTAACGCTACCCATCTTATCTTTTTATGCAATCTCACTTTATTTTGTTCAGATTGTTTAA
Protein sequenceShow/hide protein sequence
MAQHQQLKLSLLVYCSCPPSKWDQEQVDYDVYMPERVIRWTMMYIRLFLIPLRGEENCTTPTARAGAAGVRPSRTPQRIRLFMGNVTERRKELYTELQTIPGVSLEDDLV
IALALLVHSSMLTHFMDFPPEWKYDYCMLLGRAPRQSSQPDPPHSAVGDLTLPILSFYAISLYFVQIV