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Spg028448 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028448
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:12792534..12794800
RNA-Seq ExpressionSpg028448
SyntenySpg028448
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]2.9e-0633.64Show/hide
Query:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL
        PP  +K+N + +W  + G  G+GW++R+  G  + AG     R  S    E  A++E LT  L  G    D + VE+D+L +IK+LN E +   E +  L
Subjt:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL

Query:  LDIEDLAAKA
         D+  L+ +A
Subjt:  LDIEDLAAKA

CAB4273082.1 unnamed protein product [Prunus armeniaca]5.8e-0733.59Show/hide
Query:  LPNLSEIRLESLRNHEKWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADA
        LP   E++ E++ +   W  PP   LK+N +A+W  +    G+GW++R+S G +V+AG K   R  S   +E  AI+E L + + SG  +   L VE+D+
Subjt:  LPNLSEIRLESLRNHEKWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADA

Query:  LDVIKVLNCE-SIDISEAKAFLLDIEDLAAK
        L VI+++  E ++DI+     + DI+ L  +
Subjt:  LDVIKVLNCE-SIDISEAKAFLLDIEDLAAK

CAB4279811.1 unnamed protein product [Prunus armeniaca]1.1e-0836.15Show/hide
Query:  LPNLSEIRLESLRNHEKWTLPPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADAL
        LP   EI+ E++ +  K  LP   LK+N +A+W  +    G+GW++R+S G +V+AGCK   R  S   +E  AI+E L + + SG  +   L VE+D+L
Subjt:  LPNLSEIRLESLRNHEKWTLPPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADAL

Query:  DVIKVLNCE-SIDISEAKAFLLDIEDLAAK
         +I++L  E +IDI+  +  + DI+ L  +
Subjt:  DVIKVLNCE-SIDISEAKAFLLDIEDLAAK

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]2.6e-0737.61Show/hide
Query:  KINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYL---SSGQPENDALIVEADALDVIKVLNCESIDISEAKAFLLD
        K+NS ASW++EAG  G+ W+I +S GS +   CK + RKW VK LE  A+ EGL +YL    +    +  +I     L++ ++LN   +D+ E    + +
Subjt:  KINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYL---SSGQPENDALIVEADALDVIKVLNCESIDISEAKAFLLD

Query:  IEDLAAKAG
        I DL   AG
Subjt:  IEDLAAKAG

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]2.9e-0632.73Show/hide
Query:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL
        P NF K+N++A+W+   G  G+GWIIRN    + KAG + I     +  LEL AI  G+ + +SS    + +LI+E+++L+ I ++     +++E    +
Subjt:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL

Query:  LDIEDLAAKA
         DI++   +A
Subjt:  LDIEDLAAKA

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.4e-0633.64Show/hide
Query:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL
        PP  +K+N + +W  + G  G+GW++R+  G  + AG     R  S    E  A++E LT  L  G    D + VE+D+L +IK+LN E +   E +  L
Subjt:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL

Query:  LDIEDLAAKA
         D+  L+ +A
Subjt:  LDIEDLAAKA

A0A6J1D5W1 uncharacterized protein LOC1110173291.4e-0632.73Show/hide
Query:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL
        P NF K+N++A+W+   G  G+GWIIRN    + KAG + I     +  LEL AI  G+ + +SS    + +LI+E+++L+ I ++     +++E    +
Subjt:  PPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFL

Query:  LDIEDLAAKA
         DI++   +A
Subjt:  LDIEDLAAKA

A0A6J5UAY2 Reverse transcriptase domain-containing protein2.8e-0733.59Show/hide
Query:  LPNLSEIRLESLRNHEKWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADA
        LP   E++ E++ +   W  PP   LK+N +A+W  +    G+GW++R+S G +V+AG K   R  S   +E  AI+E L + + SG  +   L VE+D+
Subjt:  LPNLSEIRLESLRNHEKWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADA

Query:  LDVIKVLNCE-SIDISEAKAFLLDIEDLAAK
        L VI+++  E ++DI+     + DI+ L  +
Subjt:  LDVIKVLNCE-SIDISEAKAFLLDIEDLAAK

A0A6J5UV01 Reverse transcriptase domain-containing protein5.1e-0936.15Show/hide
Query:  LPNLSEIRLESLRNHEKWTLPPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADAL
        LP   EI+ E++ +  K  LP   LK+N +A+W  +    G+GW++R+S G +V+AGCK   R  S   +E  AI+E L + + SG  +   L VE+D+L
Subjt:  LPNLSEIRLESLRNHEKWTLPPNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADAL

Query:  DVIKVLNCE-SIDISEAKAFLLDIEDLAAK
         +I++L  E +IDI+  +  + DI+ L  +
Subjt:  DVIKVLNCE-SIDISEAKAFLLDIEDLAAK

R0HAP3 RNase H domain-containing protein (Fragment)1.4e-0632.06Show/hide
Query:  EEPDEWQLTHQGKQNLKEQRKRTLPNLSEIRLESLRNHEKWTLPPN-FLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIK
        E+ +EW    +G+  LK+++    P L         N EKW  PP  ++K N++ +WN E    G+GW++RN SG ++  G + + R  S   +EL AI+
Subjt:  EEPDEWQLTHQGKQNLKEQRKRTLPNLSEIRLESLRNHEKWTLPPN-FLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIK

Query:  EGLTSYLSSGQPENDALIVEADALDVIKVLN
          +TS L   + +   +I E+D+L ++ +LN
Subjt:  EGLTSYLSSGQPENDALIVEADALDVIKVLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.7e-0731.91Show/hide
Query:  KWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCE
        +W  PP  ++K N++A+W  E    GIGWI+RN SG ++  G + + R  +V   EL A++    + L+  +     +I E+DA  ++ +LN +
Subjt:  KWTLPP-NFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCE

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0627.27Show/hide
Query:  NQAVASKEEPDEWQLTHQGKQNLKEQRKRTLPNLSEIRLESLRNH-EKWTLPPN-FLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVK
        N+ V    E +  ++  + + +L+E R RT       + +  R+   +W  PP+ ++K N++A+WN +    GIGW++RN  G +   G + + +  SV 
Subjt:  NQAVASKEEPDEWQLTHQGKQNLKEQRKRTLPNLSEIRLESLRNH-EKWTLPPN-FLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVK

Query:  NLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESI
          EL A++    + LS  + + + +I E+D+  +I++LN + I
Subjt:  NLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESI

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.2e-0425.26Show/hide
Query:  KWTLP-PNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCES
        KW+ P  + LK N +AS ++     G+GWI+RNS G++++ G  +   + + +  E + +   + +    G  +   +I E D   + +++N +S
Subjt:  KWTLP-PNFLKINSNASWNDEAGCRGIGWIIRNSSGSLVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGAATCAAGCAGTTGCTTCAAAGGAGGA
ACCAGATGAATGGCAACTAACCCATCAAGGTAAACAGAATTTAAAAGAGCAGCGGAAACGAACCTTGCCTAATTTATCAGAGATTCGGCTGGAGAGTCTTCGGAATCACG
AGAAGTGGACCCTCCCTCCGAATTTTCTTAAAATAAATTCAAATGCGTCTTGGAACGATGAAGCGGGTTGCAGGGGAATCGGTTGGATCATTCGCAATTCCTCAGGGTCT
CTGGTTAAAGCAGGGTGTAAGCGAATTAATCGTAAATGGAGTGTCAAAAATTTGGAATTGGCTGCGATAAAGGAAGGGCTAACCTCTTACCTCTCCTCTGGCCAACCTGA
AAACGATGCTTTGATTGTGGAAGCTGATGCCCTAGACGTGATCAAAGTTCTGAATTGTGAGAGTATTGACATCTCTGAAGCCAAGGCTTTTTTGCTCGATATTGAAGATT
TGGCGGCTAAAGCGGGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTACGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAGTGAATCAAGCAGTTGCTTCAAAGGAGGA
ACCAGATGAATGGCAACTAACCCATCAAGGTAAACAGAATTTAAAAGAGCAGCGGAAACGAACCTTGCCTAATTTATCAGAGATTCGGCTGGAGAGTCTTCGGAATCACG
AGAAGTGGACCCTCCCTCCGAATTTTCTTAAAATAAATTCAAATGCGTCTTGGAACGATGAAGCGGGTTGCAGGGGAATCGGTTGGATCATTCGCAATTCCTCAGGGTCT
CTGGTTAAAGCAGGGTGTAAGCGAATTAATCGTAAATGGAGTGTCAAAAATTTGGAATTGGCTGCGATAAAGGAAGGGCTAACCTCTTACCTCTCCTCTGGCCAACCTGA
AAACGATGCTTTGATTGTGGAAGCTGATGCCCTAGACGTGATCAAAGTTCTGAATTGTGAGAGTATTGACATCTCTGAAGCCAAGGCTTTTTTGCTCGATATTGAAGATT
TGGCGGCTAAAGCGGGAGCTTAA
Protein sequenceShow/hide protein sequence
MKYDRSSTRQLAIPSSVTGVHQYTMIVVNQAVASKEEPDEWQLTHQGKQNLKEQRKRTLPNLSEIRLESLRNHEKWTLPPNFLKINSNASWNDEAGCRGIGWIIRNSSGS
LVKAGCKRINRKWSVKNLELAAIKEGLTSYLSSGQPENDALIVEADALDVIKVLNCESIDISEAKAFLLDIEDLAAKAGA