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Spg028459 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028459
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationscaffold7:14107901..14114581
RNA-Seq ExpressionSpg028459
SyntenySpg028459
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006950 - response to stress (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0005544 - calcium-dependent phospholipid binding (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]1.5e-4493.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]3.6e-4391.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q  SVSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]1.5e-4493.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

XP_004137152.1 uncharacterized protein LOC101211400 [Cucumis sativus]3.6e-4391.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIYEPPSQD Q  SVSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]1.5e-4493.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic7.1e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic7.1e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic7.1e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A6J1DMT5 30S ribosomal protein S17, chloroplastic1.5e-4289.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIY PPSQD+QT   SDKSKA+
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.9e-4289.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFY+KLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIYEPPSQ+NQ   VSDK K S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S178.4e-1947.42Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSK
        K++VG+VVS+KM K+V V V+RL  +  + +Y+KRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++ E P +  +T+ +   S+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSK

B1I1J7 30S ribosomal protein S176.4e-1960Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  + LY R ++RT KFMAHDE+NQC IGD+VK+  +RPLS+ K W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S177.1e-1854.79Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  + +Y +YIKRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S175.5e-1852.63Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  + +Y +YIKRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S171.2e-1755.41Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F + LY + +KRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein3.5e-3672.38Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS
        MK V+G VVSNKMQKSVVVAVDRLF+NK+YNRY+KRTSKFMAHD+ + CNIGDRVKLDPSRPLSK KHW+VAEI++KARIY P +      +VS  + AS
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        S STT
Subjt:  SPSTT

AT1G79850.1 ribosomal protein S174.8e-0939.74Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        MK + G VV     K+V V V RL  +  Y R ++   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein4.3e-3467.31Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQD---NQTVSVSDKS
        MK V+G VVSNKMQ SVVVAVDRLF+N +YNRY+KRTSKFMAHDE + CNIGDRVKLDPSRPLSK KHW+V+EI++KARIY P +     N + S++++ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQD---NQTVSVSDKS

Query:  KASS
          SS
Subjt:  KASS

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.7e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAGTCGGTGGTGGTTGCAGTGGATAGGTTGTTCTATAACAAGCTCTATAATCGTTACATTAAACGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGAACCACCATCACAAGATAACCAGACTGTTTCTGTTTCCGACAAAAGCAAAGCTTCATCTCCTTCAACCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAGTCGGTGGTGGTTGCAGTGGATAGGTTGTTCTATAACAAGCTCTATAATCGTTACATTAAACGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGAACCACCATCACAAGATAACCAGACTGTTTCTGTTTCCGACAAAAGCAAAGCTTCATCTCCTTCAACCACCTAA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYNKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQDNQTVSVSDKSKASSPSTT