; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028466 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028466
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:10386108..10388714
RNA-Seq ExpressionSpg028466
SyntenySpg028466
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL96670.1 hypothetical protein [Colocasia esculenta]1.3e-2030.83Show/hide
Query:  VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTN
        + G +D  L  ++G  +P T  E ++ AQR           R E G +S     S NG DR   K  R    P     +  YTPLT   EQ+LA I++  
Subjt:  VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTN

Query:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGKHRTA
         ++  +++RSDP +R+ NKYC FH DHGH T EC QL+D+IE LI+ GYL  F                                V R +  P+ + RT 
Subjt:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGKHRTA

Query:  SNVWERTVDSYKIGQLSSGIWTGRPKQCPPREIADAEHLRDRIILFQWSTDFP
                +  +I  ++ G   GR      R+ A   H+ DR     WS  +P
Subjt:  SNVWERTVDSYKIGQLSSGIWTGRPKQCPPREIADAEHLRDRIILFQWSTDFP

MQL97644.1 hypothetical protein [Colocasia esculenta]3.1e-1939.24Show/hide
Query:  VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTN
        + G +D  L  ++G  +P T  E ++ AQR           RVE G +S     S NG DR   K  R    P     +  YTPLT  LEQ+LA I++  
Subjt:  VPGLQDERLLNSIGESEPRTYVEFMTRAQRG-------KGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPE--AKYNRYTPLTAPLEQVLAAIQDTN

Query:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK
         ++  +++RSDP +R+ NKYC FH DHGH T EC QL+D+IE LI+  YL  F+ +++
Subjt:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]8.1e-2034.87Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR---DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNL
        G++DE L  S G+  P T+ E ++RAQR    G+    +R  DG R+      +  +    R E ++     +P  K+ +YTP T P+EQVL  I+D  L
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR---DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNL

Query:  LKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGK
        LK  E++++   +R+  +YC+FH DHGH T++C  L++++E LIR GYLKE++ + K        Q  E+ K  +       GG   R+S  K K
Subjt:  LKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGK

XP_030936700.1 uncharacterized protein LOC115961955 [Quercus lobata]4.0e-1938.75Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQR----------GKGRRVE--DGGRSRHDHSSTN-GRDRAEAKEPRG-LAEPEAKYNRYTPLTAPLEQVLAAIQ
        G+  +  ++ + E EP+T  E +  AQ            K +++E  D   +RH     +  + R E K+ R   A P  +  +YTPL  PL+QVL  I+
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQR----------GKGRRVE--DGGRSRHDHSSTN-GRDRAEAKEPRG-LAEPEAKYNRYTPLTAPLEQVLAAIQ

Query:  DTNLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQD
        D   LK  EK++ DP++RN NKYC FH DHGH T EC  L+ +IE LIR+G L+ F+G+D
Subjt:  DTNLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQD

XP_030970463.1 uncharacterized protein LOC115990823 [Quercus lobata]3.1e-1936.42Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQ-------------RGKGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEP--EAKYNRYTPLTAPLEQVLAAI
        G+  +  ++ + E EP++  E +  AQ             R +  R++      H+  +   + R + +  R   +P    +  +YTPL APLEQVL  I
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQ-------------RGKGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEP--EAKYNRYTPLTAPLEQVLAAI

Query:  QDTNLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK
        +D   LK  EKL+ DP++RN NKYC FH DHGH T EC  L+ +IE LIR+G L+ F+G+D+
Subjt:  QDTNLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK

TrEMBL top hitse value%identityAlignment
A0A6J1DDR5 uncharacterized protein LOC1110201159.7e-1934.3Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQR------------GKGRRVEDGGRSRHDHSSTNGR----------DRAEAKEPRGLAEPEAKYNRYTPLTAPL
        GL DE L   +GE  P T+ E + +A++            G+  +  D GR+  D   T+ +           R + +           Y RYTP T P+
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQR------------GKGRRVEDGGRSRHDHSSTNGR----------DRAEAKEPRGLAEPEAKYNRYTPLTAPL

Query:  EQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK
         ++L  I+++    LLKR EKLR DP++RN +KYC+FH DHGH+T  C +L+ +IE LI++ Y K+F+G+ +
Subjt:  EQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK

A0A6J1DS14 uncharacterized protein LOC1110229936.3e-1836.42Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQ---------RGKGRRVED--------------GGRSRHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAP
        GL DE L   +GE  P T+VE + +A+         R K  R+E                 +S+   SS++G  R E +  +        Y RYTP T P
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQ---------RGKGRRVED--------------GGRSRHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAP

Query:  LEQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK
        + ++L  I++    NLLKR EKL+ DP +R+ +KYC FH DHGH T  C +L+ +IE LI++GY K+F+G+ +
Subjt:  LEQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK

A0A6J1DWY0 uncharacterized protein LOC1110252933.9e-2034.87Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR---DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNL
        G++DE L  S G+  P T+ E ++RAQR    G+    +R  DG R+      +  +    R E ++     +P  K+ +YTP T P+EQVL  I+D  L
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQR----GK---GRRVEDGGRSRHDHSSTNGR---DRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNL

Query:  LKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGK
        LK  E++++   +R+  +YC+FH DHGH T++C  L++++E LIR GYLKE++ + K        Q  E+ K  +       GG   R+S  K K
Subjt:  LKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGK

A0A6J1DZ52 uncharacterized protein LOC1110256126.3e-1834.01Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQRGKG-------RRVEDGGRS--RHDHSSTNGRDRAEAKEPR--GLAEPEAKYNRYTPLTAPLEQVLAAIQDTN
        G++DE L  S G+  P T+ E ++RAQ+          ++  +G R+  + + S          K+ R  G  +   K+ +YTP T PLEQVL  I+D  
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQRGKG-------RRVEDGGRS--RHDHSSTNGRDRAEAKEPR--GLAEPEAKYNRYTPLTAPLEQVLAAIQDTN

Query:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYT-AGGVWRRKSEPKGK
        LLK  E +++ P++R+  +YC+FH DHGH T +C  L++++E LIR+GYLKE++        L      E   +S   E  T  GG   ++S+ K K
Subjt:  LLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYT-AGGVWRRKSEPKGK

A0A6J1E1B3 uncharacterized protein LOC1110255211.6e-1834.88Show/hide
Query:  GLQDERLLNSIGESEPRTYVEFMTRAQR-------------------GKGRRVEDGGRS---RHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPL
        GL DE L   +GE  P T+ E + +A++                    +GR  +D G++     D  S++   +A+ +           Y RYTP T P 
Subjt:  GLQDERLLNSIGESEPRTYVEFMTRAQR-------------------GKGRRVEDGGRS---RHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPL

Query:  EQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK
         ++L  I++T    LLKR +KLR DP++RN +KYC FH DHGH T  C +L+ +IE LI+ GY K+F+G+ +
Subjt:  EQVLAAIQDT---NLLKRSEKLRSDPDRRNMNKYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACGAAAATCAACCGATCACGAACGAGTCGAATCCCCTAGTTCGACTCCAAGCCCAGGAAACCGAGATTGCAGCGATTAAGGGGAGGATGAATGAGATGGGGCA
GAACTTGACTGAAATCTTCAGTCTGTTGAAGAAACCCGAGTCTGTAAGGCACGAGGAAGAGCTTTTGAGCCGAGATCCTCAGAAGGGTAAAGGAATAGCAGACGAGGAGG
TAGGGGATTCGGAGAGTGTAACTAGTCGAATGCACCATCCAGGGGATGACCAGCCCCAGAAGGAAGCTGGACCAAGTCGCAAAAAGGCTCGCAGAAATTCACCTCTGAAG
CCAGTGCCAGGTCTACAGGATGAAAGATTGCTCAACTCGATCGGTGAAAGCGAGCCGCGAACATATGTGGAATTCATGACCCGAGCACAAAGAGGAAAAGGGCGCCGGGT
AGAAGATGGAGGTCGGAGCCGGCATGACCACTCCTCGACCAATGGTCGAGACCGAGCAGAGGCCAAAGAGCCGCGGGGCCTCGCAGAGCCAGAAGCCAAGTATAACAGGT
ATACACCGCTAACAGCTCCACTTGAACAGGTTTTGGCCGCAATACAGGATACAAATCTGTTGAAGCGTTCGGAAAAGTTGAGGTCAGACCCAGACAGGAGAAACATGAAT
AAATATTGCATGTTCCACGGAGACCACGGCCACACGACCCGAGAATGCATACAGCTAAGGGATAAAATAGAAACCCTAATCCGAGAGGGCTACCTCAAGGAATTCATGGG
ACAAGACAAAGGGAAAATACCACTACCGACAGATCAAGGCCATGAAGCTGGGAAGCGATCGTCTGAGGCCGAGCCTTACACCGCTGGTGGGGTTTGGCGGAGAAAAAGTG
AGCCCAAGGGGAAGCATCGAACTGCCAGTAACGTTTGGGAAAGGACCGTAGACAGTTACAAGATTGGTCAACTTTCTAGTGGAATATGGACAGGAAGGCCCAAACAATGC
CCGCCTCGGGAAATAGCAGATGCCGAGCATTTGAGGGATCGAATCATCCTCTTCCAATGGAGCACTGATTTTCCTCTGTTATGTTTCCTGTCAAAACTTGCACTTGAAGA
GAGGCCAAAGAATTTCCTCGCCCTCCCCAAGTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGGACACAACACTTGAAGAGGGGGAATTTCCTCCGCCTCCCCAAGCTT
TTTCCCAGAAGAGTGTACGCACCCTTGGGATGACCACAGTGCTTGAAGAGAGGCCCGAGAACTTCCTCAACCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCTTG
GGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACGAAAATCAACCGATCACGAACGAGTCGAATCCCCTAGTTCGACTCCAAGCCCAGGAAACCGAGATTGCAGCGATTAAGGGGAGGATGAATGAGATGGGGCA
GAACTTGACTGAAATCTTCAGTCTGTTGAAGAAACCCGAGTCTGTAAGGCACGAGGAAGAGCTTTTGAGCCGAGATCCTCAGAAGGGTAAAGGAATAGCAGACGAGGAGG
TAGGGGATTCGGAGAGTGTAACTAGTCGAATGCACCATCCAGGGGATGACCAGCCCCAGAAGGAAGCTGGACCAAGTCGCAAAAAGGCTCGCAGAAATTCACCTCTGAAG
CCAGTGCCAGGTCTACAGGATGAAAGATTGCTCAACTCGATCGGTGAAAGCGAGCCGCGAACATATGTGGAATTCATGACCCGAGCACAAAGAGGAAAAGGGCGCCGGGT
AGAAGATGGAGGTCGGAGCCGGCATGACCACTCCTCGACCAATGGTCGAGACCGAGCAGAGGCCAAAGAGCCGCGGGGCCTCGCAGAGCCAGAAGCCAAGTATAACAGGT
ATACACCGCTAACAGCTCCACTTGAACAGGTTTTGGCCGCAATACAGGATACAAATCTGTTGAAGCGTTCGGAAAAGTTGAGGTCAGACCCAGACAGGAGAAACATGAAT
AAATATTGCATGTTCCACGGAGACCACGGCCACACGACCCGAGAATGCATACAGCTAAGGGATAAAATAGAAACCCTAATCCGAGAGGGCTACCTCAAGGAATTCATGGG
ACAAGACAAAGGGAAAATACCACTACCGACAGATCAAGGCCATGAAGCTGGGAAGCGATCGTCTGAGGCCGAGCCTTACACCGCTGGTGGGGTTTGGCGGAGAAAAAGTG
AGCCCAAGGGGAAGCATCGAACTGCCAGTAACGTTTGGGAAAGGACCGTAGACAGTTACAAGATTGGTCAACTTTCTAGTGGAATATGGACAGGAAGGCCCAAACAATGC
CCGCCTCGGGAAATAGCAGATGCCGAGCATTTGAGGGATCGAATCATCCTCTTCCAATGGAGCACTGATTTTCCTCTGTTATGTTTCCTGTCAAAACTTGCACTTGAAGA
GAGGCCAAAGAATTTCCTCGCCCTCCCCAAGTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGGACACAACACTTGAAGAGGGGGAATTTCCTCCGCCTCCCCAAGCTT
TTTCCCAGAAGAGTGTACGCACCCTTGGGATGACCACAGTGCTTGAAGAGAGGCCCGAGAACTTCCTCAACCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCTTG
GGATGA
Protein sequenceShow/hide protein sequence
MEHENQPITNESNPLVRLQAQETEIAAIKGRMNEMGQNLTEIFSLLKKPESVRHEEELLSRDPQKGKGIADEEVGDSESVTSRMHHPGDDQPQKEAGPSRKKARRNSPLK
PVPGLQDERLLNSIGESEPRTYVEFMTRAQRGKGRRVEDGGRSRHDHSSTNGRDRAEAKEPRGLAEPEAKYNRYTPLTAPLEQVLAAIQDTNLLKRSEKLRSDPDRRNMN
KYCMFHGDHGHTTRECIQLRDKIETLIREGYLKEFMGQDKGKIPLPTDQGHEAGKRSSEAEPYTAGGVWRRKSEPKGKHRTASNVWERTVDSYKIGQLSSGIWTGRPKQC
PPREIADAEHLRDRIILFQWSTDFPLLCFLSKLALEERPKNFLALPKFPQKSVRTPGMDTTLEEGEFPPPPQAFSQKSVRTLGMTTVLEERPENFLNLPKLFPRRVYAPL
G