CuGenDBv2

Gene ID	Spg028479
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	scaffold7:14913042..14914174
RNA-Seq Expression	Spg028479
Synteny	Spg028479
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

5.3e-41

77.6

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

KAF1890003.1 hypothetical protein Lal_00025334 [Lupinus albus]

2.4e-41

75.2

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MA+  LK ++A+A+ +GVTEARARIFGH LNPTG +S+HK+LRKKLIG+KV+QWYPYDIKKDDPLVMARQEQEYSLSLSLF+ + I  +       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

5.3e-41

77.6

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]

4.0e-41

78.4

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

5.3e-41

77.6

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

2.5e-41

77.6

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

A0A6A5NYD2 Uncharacterized protein

1.1e-41

75.2

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MA+  LK ++A+A+ +GVTEARARIFGH LNPTG +S+HK+LRKKLIG+KV+QWYPYDIKKDDPLVMARQEQEYSLSLSLF+ + I  +       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

1.9e-41

78.4

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

1.3e-40

75.2

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

5.7e-41

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQE                       RLSK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRRGKGPPKKGQGRRAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

3.2e-36

62.4

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK
        MA+ SLKS++++AV +GVTEARARIFGH+LNPTG RS HK+LRKKLIGDKV++WYPYDIK +DP V+AR+E+E                       R+SK
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSK

Query:  LEMLKRRGKGPPKKGQGRRAAKRNK
        LEMLKRR KGPPKKG G+RAAKRNK
Subjt:  LEMLKRRGKGPPKKGQGRRAAKRNK

Sequences

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CDS sequence

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ATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGGCTACGATC
TACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTGTCACAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGT
ACTCTCTCTCCCTCTCTCTCTTTATTTGTCTCAATATTCTGATTATATCTCCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAAGGA
CCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAATAAGTAG

mRNA sequence

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Protein sequence

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MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQEYSLSLSLFICLNILIISPIYFARRLSKLEMLKRRGKG
PPKKGQGRRAAKRNK

Spg028479 (gene) of Sponge gourd (cylindrica) v1 genome