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Spg028500 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028500
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:12755053..12756879
RNA-Seq ExpressionSpg028500
SyntenySpg028500
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0748.57Show/hide
Query:  KLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKLLIDDILGASSR
        KLNS A W E+ G GG+ W +HDS GS ICI  K++  KW +K+LE  A++EG+K   LLI + +  S R
Subjt:  KLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKLLIDDILGASSR

KNA03763.1 hypothetical protein SOVF_206000, partial [Spinacia oleracea]6.5e-0524.77Show/hide
Query:  DYWSWISENLNSEELAKISIIMWNF---RN-------KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVW
        D++ W+ ++ N E++  I++I+WN    RN        K    +   A SI+++ + + ++   +     +  + +  A QA WE     + K+N+DA  
Subjt:  DYWSWISENLNSEELAKISIIMWNF---RN-------KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVW

Query:  FEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEG---------------------IKEVK----------LLIDDILGASSRLQAVEFS
        F D G  G+   + D  GS   +   ++ H W ++I EA AI+ G                     IK++K          +++ ++   SS   +V FS
Subjt:  FEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEG---------------------IKEVK----------LLIDDILGASSRLQAVEFS

Query:  HCNRLANSVAHWLA
        H  R AN  AH +A
Subjt:  HCNRLANSVAHWLA

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]9.7e-0926.79Show/hide
Query:  RNQWEAKDYWSWISENLNSEELAKISIIMWNFRNKKQAT--------------------NINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQAT
        R  W  KD W+W+   L+ EE+A   +I W     +  +                    N NI+  + I     S  +  D YL R    +   +     
Subjt:  RNQWEAKDYWSWISENLNSEELAKISIIMWNFRNKKQAT--------------------NINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQAT

Query:  WEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKL
        W    +N WKLN+DA W E+R  GGI W + D  G ++  G  K+  K ++  LE   I+ G++ + +
Subjt:  WEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.5e-0623.56Show/hide
Query:  SIIMWNFRN----KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIG
        S ++WN RN    + + ++ +     + K + ES  + E S     K        ++  WE    + W LN+DA W +    GGI W +    G ++  G
Subjt:  SIIMWNFRN----KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIG

Query:  MKKMTHKWDMKILEATAILEGIK------------------EVKLL--------------IDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSIV
         + +    ++K+LEA+AILEG++                  EV+ L              +++IL      + + F+   R  N  AH LA++ S L   
Subjt:  MKKMTHKWDMKILEATAILEGIK------------------EVKLL--------------IDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSIV

Query:  GDQANPWMRDCGQIVWAPDLPNWSS
                     ++W    PNW S
Subjt:  GDQANPWMRDCGQIVWAPDLPNWSS

XP_030936078.1 uncharacterized protein LOC115961199 [Quercus lobata]1.9e-0422.03Show/hide
Query:  KDYWSWISE-NLNSEELAKISIIMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGG
        KD  S + E   N E +  +   +W+ RN+ + ++ +     +I+   ++   ++ S     +    +    +  W     N +KLN D  +F + G  G
Subjt:  KDYWSWISE-NLNSEELAKISIIMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGG

Query:  ICWTMHDSSGSLICIGMKKMTHKWDMKILEATA----------------ILEGIKEVKL---------------LIDDILGASSRLQAVEFSHCNRLANS
        +   +HDS GS+I    ++    +   I+EA A                +LEG  EV +               L++      S + ++ FSH  R  N 
Subjt:  ICWTMHDSSGSLICIGMKKMTHKWDMKILEATA----------------ILEGIKEVKL---------------LIDDILGASSRLQAVEFSHCNRLANS

Query:  VAHWLARKVSFLSIVGDQANPWMRDCGQIVWAPDLP
        +AH LAR    +              G  VW  D+P
Subjt:  VAHWLARKVSFLSIVGDQANPWMRDCGQIVWAPDLP

TrEMBL top hitse value%identityAlignment
A0A2N9IXD3 Uncharacterized protein3.5e-0425.49Show/hide
Query:  EELAKISIIMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLIC
        E  + I   +W+ RNK +      +AD I     E  +E++ S   +  P    +   QA W K  +  +K+N D   F +    GI   + ++SG+ + 
Subjt:  EELAKISIIMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLIC

Query:  IGMKKMTHKWDMKILEATA-------ILE-GIKEVK-----------------------LLIDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSI
           +K+     ++  EA A        LE G+ EV+                       ++I+D    + RL    F H  RL NSVAH LAR+  F ++
Subjt:  IGMKKMTHKWDMKILEATA-------ILE-GIKEVK-----------------------LLIDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSI

Query:  VGDQ
          D+
Subjt:  VGDQ

A0A6J1CQG0 uncharacterized protein LOC1110132164.7e-0926.79Show/hide
Query:  RNQWEAKDYWSWISENLNSEELAKISIIMWNFRNKKQAT--------------------NINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQAT
        R  W  KD W+W+   L+ EE+A   +I W     +  +                    N NI+  + I     S  +  D YL R    +   +     
Subjt:  RNQWEAKDYWSWISENLNSEELAKISIIMWNFRNKKQAT--------------------NINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQAT

Query:  WEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKL
        W    +N WKLN+DA W E+R  GGI W + D  G ++  G  K+  K ++  LE   I+ G++ + +
Subjt:  WEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEVKL

A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-0623.56Show/hide
Query:  SIIMWNFRN----KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIG
        S ++WN RN    + + ++ +     + K + ES  + E S     K        ++  WE    + W LN+DA W +    GGI W +    G ++  G
Subjt:  SIIMWNFRN----KKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIG

Query:  MKKMTHKWDMKILEATAILEGIK------------------EVKLL--------------IDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSIV
         + +    ++K+LEA+AILEG++                  EV+ L              +++IL      + + F+   R  N  AH LA++ S L   
Subjt:  MKKMTHKWDMKILEATAILEGIK------------------EVKLL--------------IDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSIV

Query:  GDQANPWMRDCGQIVWAPDLPNWSS
                     ++W    PNW S
Subjt:  GDQANPWMRDCGQIVWAPDLPNWSS

A0A7C8ZED5 Uncharacterized protein5.4e-0524.06Show/hide
Query:  WISENLNSEELAKISII---MWNFRNKK----QATNINIEADSIIKSIEE----SFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFED
        W+ E +  E +   + I   +W +RNKK    + TN+ +   + +K +++    + +  EDS  K L         S   W      + K+N+DA    D
Subjt:  WISENLNSEELAKISII---MWNFRNKK----QATNINIEADSIIKSIEE----SFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFED

Query:  RGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATA----------------ILE---------------GIKEVKLLIDDILGASSRLQAVEFSHCN
         G  G+ W   D  G ++ +G+K+    W  ++ E  A                ILE               G   + +L+DDI       +++  SH  
Subjt:  RGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATA----------------ILE---------------GIKEVKLLIDDILGASSRLQAVEFSHCN

Query:  RLANSVAHWLAR
        R+ N+VAH +AR
Subjt:  RLANSVAHWLAR

A0A803L9N8 Uncharacterized protein3.5e-0424.07Show/hide
Query:  QWEAKDYWSW------ISENLNSEELAKISI-IMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDA
        QW   +++ W      I +  +S EL  + I  +W  RNK     + ++           F E+  + L+       R+      W    S+ +KLN+DA
Subjt:  QWEAKDYWSW------ISENLNSEELAKISI-IMWNFRNKKQATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDA

Query:  VWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEV-------------------------------KLLIDDILGASSRLQAVE
           +DR  GG+   + D+ G ++    K +     +  +EA A+L G++ V                               +L++ DIL  +     V 
Subjt:  VWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEV-------------------------------KLLIDDILGASSRLQAVE

Query:  FSHCNRLANSVAHWLARKVSFLSIVGDQANPWMRDCGQIVW
        FS C RL N VAH +A     LS+   +   WM DC   V+
Subjt:  FSHCNRLANSVAHWLARKVSFLSIVGDQANPWMRDCGQIVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCTTCAACATCTGTCTTTGATTGGCTCAAAGTAATAAGCGATCAACATGATGGAAAGACAAAGACCTTGGAGTCTAGATCTAATCTAGATGATCCTAGTGATCA
AGGTTTTCAAAGAAAACTTACTTTCGTAGGAAGCCTTGATCGATTCGCCTTGATCTGTAGTAATTTGGATGAGTCTGTCGTTTCCCACTACAGATCCTTGGATAAATCGT
GGAGGAATCAATGGGAGGCTAAGGATTATTGGAGCTGGATTTCAGAAAATCTCAATTCAGAAGAGCTAGCAAAAATTTCGATCATCATGTGGAATTTCAGAAACAAAAAG
CAAGCAACCAACATCAACATTGAAGCAGATTCAATCATCAAATCCATCGAAGAGAGTTTCAAAGAATGGGAAGACTCTTACCTTAAGAGATTAAAACCGTGTAAAGTGAG
GAACCACGCTAGTCAAGCTACTTGGGAGAAGATGAAGTCGAATTTTTGGAAACTCAACTCAGACGCTGTTTGGTTTGAAGACCGTGGTGCTGGAGGTATTTGCTGGACAA
TGCATGACTCGTCTGGATCCCTAATTTGCATTGGTATGAAGAAGATGACTCACAAATGGGATATGAAAATTTTGGAAGCTACCGCCATTTTGGAAGGAATTAAGGAGGTG
AAACTGCTCATCGACGACATCCTCGGTGCATCATCTCGTCTTCAAGCTGTTGAATTTAGCCACTGTAATCGCCTTGCCAACTCAGTAGCCCACTGGTTGGCTAGGAAAGT
GTCTTTTTTGTCGATTGTTGGTGATCAGGCGAATCCCTGGATGAGGGATTGTGGGCAAATTGTTTGGGCCCCCGATCTTCCAAATTGGTCTTCCCCTCCTTTTTATGAGG
GTAGTTGTATGGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGACCTTCAACATCTGTCTTTGATTGGCTCAAAGTAATAAGCGATCAACATGATGGAAAGACAAAGACCTTGGAGTCTAGATCTAATCTAGATGATCCTAGTGATCA
AGGTTTTCAAAGAAAACTTACTTTCGTAGGAAGCCTTGATCGATTCGCCTTGATCTGTAGTAATTTGGATGAGTCTGTCGTTTCCCACTACAGATCCTTGGATAAATCGT
GGAGGAATCAATGGGAGGCTAAGGATTATTGGAGCTGGATTTCAGAAAATCTCAATTCAGAAGAGCTAGCAAAAATTTCGATCATCATGTGGAATTTCAGAAACAAAAAG
CAAGCAACCAACATCAACATTGAAGCAGATTCAATCATCAAATCCATCGAAGAGAGTTTCAAAGAATGGGAAGACTCTTACCTTAAGAGATTAAAACCGTGTAAAGTGAG
GAACCACGCTAGTCAAGCTACTTGGGAGAAGATGAAGTCGAATTTTTGGAAACTCAACTCAGACGCTGTTTGGTTTGAAGACCGTGGTGCTGGAGGTATTTGCTGGACAA
TGCATGACTCGTCTGGATCCCTAATTTGCATTGGTATGAAGAAGATGACTCACAAATGGGATATGAAAATTTTGGAAGCTACCGCCATTTTGGAAGGAATTAAGGAGGTG
AAACTGCTCATCGACGACATCCTCGGTGCATCATCTCGTCTTCAAGCTGTTGAATTTAGCCACTGTAATCGCCTTGCCAACTCAGTAGCCCACTGGTTGGCTAGGAAAGT
GTCTTTTTTGTCGATTGTTGGTGATCAGGCGAATCCCTGGATGAGGGATTGTGGGCAAATTGTTTGGGCCCCCGATCTTCCAAATTGGTCTTCCCCTCCTTTTTATGAGG
GTAGTTGTATGGGTGGTTAG
Protein sequenceShow/hide protein sequence
MRPSTSVFDWLKVISDQHDGKTKTLESRSNLDDPSDQGFQRKLTFVGSLDRFALICSNLDESVVSHYRSLDKSWRNQWEAKDYWSWISENLNSEELAKISIIMWNFRNKK
QATNINIEADSIIKSIEESFKEWEDSYLKRLKPCKVRNHASQATWEKMKSNFWKLNSDAVWFEDRGAGGICWTMHDSSGSLICIGMKKMTHKWDMKILEATAILEGIKEV
KLLIDDILGASSRLQAVEFSHCNRLANSVAHWLARKVSFLSIVGDQANPWMRDCGQIVWAPDLPNWSSPPFYEGSCMGG