; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028502 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028502
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:15525186..15526577
RNA-Seq ExpressionSpg028502
SyntenySpg028502
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.2e-1842.66Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E   KR+          K++R+ D  +G     R R  + D  +KFE+YT T+VP EQ+LMEI+N  LL  P ++ ++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.5e-2144.76Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR+          K++R+ D  +G     R R  + D  +KFE+YTPT+VP EQ+LMEI++  LL  P ++K++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]2.5e-1942.95Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSS-DHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDK
        +KYMSAEE    KK E E KR+    +    K    + +  DR           + D  +KFE+YTPT+VP EQ+LMEI++  LL  P  +K+ P+ R K
Subjt:  EKYMSAEELLKSKKLEREHKRSSSS-DHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDK

Query:  SQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  SQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]9.4e-1942.66Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR+          K++R+ D  +G     R R  + D  +KFE+YTPT+VP EQ+LMEI++  LL  P ++K     R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]1.0e-1741.98Show/hide
Query:  DPPFTEEKYMSAEELLKSKKLEREHKRSSSSDHDTRKD---KKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLK
        D  +   KYM+AE+ L    L  E K       DTR+D   K  RT D    + D  R RP  G    +F  +TP + P +Q+LM+I+N   L  P KLK
Subjt:  DPPFTEEKYMSAEELLKSKKLEREHKRSSSSDHDTRKD---KKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLK

Query:  SNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD-QRWPRPTRDD
         NP+ R + +YC FHRDHGH T NC  LK +IEALIR G L+ F +K   D    P P R++
Subjt:  SNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD-QRWPRPTRDD

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128055.9e-1942.66Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E   KR+          K++R+ D  +G     R R  + D  +KFE+YT T+VP EQ+LMEI+N  LL  P ++ ++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DWY0 uncharacterized protein LOC1110252937.5e-2244.76Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR+          K++R+ D  +G     R R  + D  +KFE+YTPT+VP EQ+LMEI++  LL  P ++K++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DYL6 uncharacterized protein LOC1110257854.5e-1942.66Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR+          K++R+ D  +G     R R  + D  +KFE+YTPT+VP EQ+LMEI++  LL  P ++K     R K 
Subjt:  EKYMSAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  QYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DZ52 uncharacterized protein LOC1110256121.2e-1942.95Show/hide
Query:  EKYMSAEELLKSKKLEREHKRSSSS-DHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDK
        +KYMSAEE    KK E E KR+    +    K    + +  DR           + D  +KFE+YTPT+VP EQ+LMEI++  LL  P  +K+ P+ R K
Subjt:  EKYMSAEELLKSKKLEREHKRSSSS-DHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDK

Query:  SQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  SQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

A0A7N2N9G0 Reverse transcriptase5.6e-1740.49Show/hide
Query:  KYMSAEELLKSKKLEREHKRSSSSDHDTRKD---KKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRD
        KYM+AE+ L +++   E  R      D R+D   KK RT D    R +  R RP  G    +F  +TP + P +Q+LM+I++   L  P KLKS+P+ R 
Subjt:  KYMSAEELLKSKKLEREHKRSSSSDHDTRKD---KKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRD

Query:  KSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ
        + +YC FHRDHGH T +C  LK +IEALIR G L+ F +K  AD   P      P +D   P+
Subjt:  KSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAGCAATGTCAGGGGGCTCAAGCCTACTGATCGTATGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGGCGTGACTACACAGCCAGGGCTGCCGAAGCTGA
AGCCAGGGCTGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCAAGGCCAAGAAGGACAGCCTCCCTTGGAAGACTGAGCTTCTTAACGCACTAAAGG
AACTTGGAAATCCACAGGGAGACCTACCTAAGTTGAAAGACTCAGGAACACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATG
AGCGCAGAAGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGACACTAGGAAGGACAAAAAGCAGCGGACCGACGACCATGA
CCGAGGCCGACCAGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAGTCCCACAGGAGCAGATCTTGATGGAGA
TAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGTCTCTTCCATCGGGATCATGGACATTCAACCAGG
AACTGTATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCGAGGCCGACCAGAGA
CGACCCAGGCAAAGACAAGGGTGGACCTCAACTGAAAATTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAGCAATGTCAGGGGGCTCAAGCCTACTGATCGTATGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGGCGTGACTACACAGCCAGGGCTGCCGAAGCTGA
AGCCAGGGCTGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCAAGGCCAAGAAGGACAGCCTCCCTTGGAAGACTGAGCTTCTTAACGCACTAAAGG
AACTTGGAAATCCACAGGGAGACCTACCTAAGTTGAAAGACTCAGGAACACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATG
AGCGCAGAAGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGTCTTCTTCATCTGACCACGACACTAGGAAGGACAAAAAGCAGCGGACCGACGACCATGA
CCGAGGCCGACCAGACCATGGCCGAGGCCGACCAGACCGAGGCGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAGTCCCACAGGAGCAGATCTTGATGGAGA
TAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGTCTCTTCCATCGGGATCATGGACATTCAACCAGG
AACTGTATTCAGCTAAAGGACGAGATTGAAGCACTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCGAGGCCGACCAGAGA
CGACCCAGGCAAAGACAAGGGTGGACCTCAACTGAAAATTCATTGA
Protein sequenceShow/hide protein sequence
MTSNVRGLKPTDRMILRSPESSTLKGRDYTARAAEAEARAAEARAAEAEARLAEAKAKKDSLPWKTELLNALKELGNPQGDLPKLKDSGTQDLEELIDQVDPPFTEEKYM
SAEELLKSKKLEREHKRSSSSDHDTRKDKKQRTDDHDRGRPDHGRGRPDRGDYLKKFERYTPTSVPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTR
NCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLKIH