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Spg028511 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028511
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold7:16298409..16301635
RNA-Seq ExpressionSpg028511
SyntenySpg028511
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]4.3e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.3e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

KAA0057574.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.3e-2446.34Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVG
        + KVP EF FT  YWEWLELVVG
Subjt:  IMKVPREFSFTSLYWEWLELVVG

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]6.6e-2545.67Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVPREF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

TYK00336.1 hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa]3.3e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G  +D WP L + + L  LS E  L + +   +LQSSIH + +N +  LTLG R+I GQ RW  
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

TrEMBL top hitse value%identityAlignment
A0A5A7TX42 Uncharacterized protein2.1e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

A0A5A7UET3 Putative mitochondrial protein2.1e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

A0A5A7UR46 Putative mitochondrial protein3.5e-2446.34Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVG
        + KVP EF FT  YWEWLELVVG
Subjt:  IMKVPREFSFTSLYWEWLELVVG

A0A5A7VHW8 PMD domain-containing protein3.2e-2545.67Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G   D WP L++ + L  LS E  L + +   +LQSSIH +  N    LTLG R+I GQ RW +
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVPREF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

A0A5D3BQ12 PMD domain-containing protein1.6e-2444.88Show/hide
Query:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS
        + T    S  +++ IL D++QP ++GL+L+VE+P +G  +D WP L + + L  LS E  L + +   +LQSSIH + +N +  LTLG R+I GQ RW  
Subjt:  FITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNS

Query:  IMKVPREFSFTSLYWEWLELVVGHDSK
        + KVP EF FT  YWEWLELVVG +++
Subjt:  IMKVPREFSFTSLYWEWLELVVGHDSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACAACCCACTTTGTATTTGATACAAATGCAATGATCCAACGCGTTCGTGTAGGGGACATGGTTCTACCCTCTCACTGGCCCAAGAGGGGTTTCTGTTTGGTGGT
TGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTCCATTAGGTCCCACTGGACCCCTGGGCTAGGGGTGAAGGCATCCTATTCATTCTCCTGCTCTCAGACCAGTA
TCTTGCCTCCAGAAGTCTCAGAGATATACCGGTGTAGCCATAGTGGTAGTGTTCGCAAGACTTGCAGAAGAATTTCCAGCAAAGACCAAGGTTCGTGGTTGCTATATTTT
CAAGAGAAGATTCAAAGGGATTTCATCACTACACATATCTCCTCTAGGAAGAAATATATTGCCATTCTCAAGGACAAAGATCAACCTATTAAAAATGGGCTTAATCTCCT
TGTTGAGGAACCAAAGTCTGGCCCTCTTTTAGACCTATGGCCTAATTTAAATGATGTCACATTTTTATCCGAACTATCGACAGAAAAGGTTTTAGGCCAAGATGAACGTG
TGTGTCTTTTACAATCTTCAATCCATCCTAAGACTTACAATCGAAATCCAATGTTGACTCTAGGACATCGAATGATAAATGGCCAAGCCCGTTGGAATTCTATAATGAAG
GTTCCTAGAGAATTTTCCTTCACTTCACTCTATTGGGAATGGTTGGAGCTTGTAGTTGGCCATGATTCGAAGGCAAATTCAAGCAGAACTCACTGGGAAGAAGAGGGTAG
TGACAGAACCCTAGTAGACGCCCATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATACAACCCACTTTGTATTTGATACAAATGCAATGATCCAACGCGTTCGTGTAGGGGACATGGTTCTACCCTCTCACTGGCCCAAGAGGGGTTTCTGTTTGGTGGT
TGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTCCATTAGGTCCCACTGGACCCCTGGGCTAGGGGTGAAGGCATCCTATTCATTCTCCTGCTCTCAGACCAGTA
TCTTGCCTCCAGAAGTCTCAGAGATATACCGGTGTAGCCATAGTGGTAGTGTTCGCAAGACTTGCAGAAGAATTTCCAGCAAAGACCAAGGTTCGTGGTTGCTATATTTT
CAAGAGAAGATTCAAAGGGATTTCATCACTACACATATCTCCTCTAGGAAGAAATATATTGCCATTCTCAAGGACAAAGATCAACCTATTAAAAATGGGCTTAATCTCCT
TGTTGAGGAACCAAAGTCTGGCCCTCTTTTAGACCTATGGCCTAATTTAAATGATGTCACATTTTTATCCGAACTATCGACAGAAAAGGTTTTAGGCCAAGATGAACGTG
TGTGTCTTTTACAATCTTCAATCCATCCTAAGACTTACAATCGAAATCCAATGTTGACTCTAGGACATCGAATGATAAATGGCCAAGCCCGTTGGAATTCTATAATGAAG
GTTCCTAGAGAATTTTCCTTCACTTCACTCTATTGGGAATGGTTGGAGCTTGTAGTTGGCCATGATTCGAAGGCAAATTCAAGCAGAACTCACTGGGAAGAAGAGGGTAG
TGACAGAACCCTAGTAGACGCCCATGAGTAG
Protein sequenceShow/hide protein sequence
MDTTHFVFDTNAMIQRVRVGDMVLPSHWPKRGFCLVVGPQTGCSLEEHWSIRSHWTPGLGVKASYSFSCSQTSILPPEVSEIYRCSHSGSVRKTCRRISSKDQGSWLLYF
QEKIQRDFITTHISSRKKYIAILKDKDQPIKNGLNLLVEEPKSGPLLDLWPNLNDVTFLSELSTEKVLGQDERVCLLQSSIHPKTYNRNPMLTLGHRMINGQARWNSIMK
VPREFSFTSLYWEWLELVVGHDSKANSSRTHWEEEGSDRTLVDAHE