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Spg028527 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028527
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein EARLY FLOWERING 4-like
Genome locationscaffold7:10202150..10202536
RNA-Seq ExpressionSpg028527
SyntenySpg028527
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]9.8e-5188.37Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFST F+N+KPR+GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]8.6e-5593.02Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ FNN+K RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]9.8e-5188.37Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFST F+N+KPR+GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]2.3e-5593.8Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ FNNNK RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]1.0e-5292Show/hide
Query:  NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF
        N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDF
Subjt:  NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF

Query:  SSDFSTVFNNNKPRNGKRGSSNQDA
        SSDFS+ FNN+K RNGKRGSSN DA
Subjt:  SSDFSTVFNNNKPRNGKRGSSNQDA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein8.9e-5086.82Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFST F+N+KPR GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

A0A1S3CIT1 uncharacterized protein LOC1035014404.7e-5188.37Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFST F+N+KPR+GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

A0A5A7SR92 Protein EARLY FLOWERING 44.7e-5188.37Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFST F+N+KPR+GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

A0A6J1GYX8 protein EARLY FLOWERING 4-like1.1e-5593.8Show/hide
Query:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ FNNNK RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNKPRNGKRGSSNQDA

A0A6J1IH33 protein EARLY FLOWERING 4-like5.1e-5392Show/hide
Query:  NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF
        N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDF
Subjt:  NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF

Query:  SSDFSTVFNNNKPRNGKRGSSNQDA
        SSDFS+ FNN+K RNGKRGSSN DA
Subjt:  SSDFSTVFNNNKPRNGKRGSSNQDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.2e-2165.48Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+MYSD ++ FS+ F+  K  NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG

O80877 Protein ELF4-LIKE 12.2e-1348.84Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS

Q570U6 Protein ELF4-LIKE 43.5e-1144.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 34.2e-1237.78Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+I  N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N+
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ

Q94BS8 Protein ELF4-LIKE 21.3e-1041.25Show/hide
Query:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+ + ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 42.5e-1244.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 42.5e-1244.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 33.0e-1337.78Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ
        + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+I  N+  NV LI+ELN N+ +V  +Y D S++FS     +   +   G  N+
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ

AT2G29950.1 ELF4-like 11.6e-1448.84Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ +YSD S +F+  F+  + R  K G +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)1.6e-2265.48Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG
        D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+MYSD ++ FS+ F+  K  NG  G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCGTCGGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGA
ATGCGACGCCGAGGTTTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGTACTGATTCAACAGGTGAACGAGAATCATCAGTCTC
GAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTG
TTCAATAACAACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCAAGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCGTCGGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGA
ATGCGACGCCGAGGTTTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGTACTGATTCAACAGGTGAACGAGAATCATCAGTCTC
GAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTG
TTCAATAACAACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCAAGATGCTTAA
Protein sequenceShow/hide protein sequence
MADNPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTV
FNNNKPRNGKRGSSNQDA