; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028549 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028549
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:10534647..10539039
RNA-Seq ExpressionSpg028549
SyntenySpg028549
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX92970.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]2.2e-1028.57Show/hide
Query:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPIL------MWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLN
        +D + W+PD  G+FSV+SAYHLA+S   N   S+S   +  L      +WK K  +      W +  +         + N E+  +              
Subjt:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPIL------MWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLN

Query:  VALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTI---CSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP
                  K Q     W  P  G  KLN+D S   S N+GG+G I+R+++GS I   C   +R S     +LL   A  EG     +I A +  L   
Subjt:  VALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTI---CSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP

Query:  PVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILA
        P+ + +DS   +N+    +N +SE++ L+ EI   I     I+     R QN  +H LA
Subjt:  PVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILA

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]2.8e-1027.31Show/hide
Query:  DDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPILMWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLNVALEGKP
        D ++W+ D KG +SVKS Y LA+  +  ++ S+S EG           ++S  S+W  ++  E+N  + SQ       LS     +  ++Y  + +    
Subjt:  DDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPILMWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLNVALEGKP

Query:  SRS-KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP------PVE
        + S +N  S   W  P  G +K+NVDA+      R G+G +IR+S G  I +  K      P K LD     E         A+R  L++       P+ 
Subjt:  SRS-KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP------PVE

Query:  VVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILARFVV
        V +DS  V N+++   + ++EI ++V E++  +    ++   H  R+ N  AH LA+  +
Subjt:  VVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILARFVV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.2e-1436.36Show/hide
Query:  NVALEGKPS-------RSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP
        N  L+GK +       R     + AQW  P   SWKLN +A+     N GG+GWI+RD  G  I +  + I     I  L++ AI EGLR+   IR    
Subjt:  NVALEGKPS-------RSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP

Query:  NLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
             P+ + SDS   I++L++   DQ+EI +L+EEI + + D   +S  H  R  N  AH LAR
Subjt:  NLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.0e-1235.37Show/hide
Query:  KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN
        K   +  +W  P    W LN DAS   S +RGG+GWIIR   G  + +GN+ +     +KLL+  AILEGLR+L  +   R      P+ + +DS  V +
Subjt:  KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN

Query:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
        +LN+   D ++  ++VEEI         ++FA   R  N  AH LA+
Subjt:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.2e-1438.46Show/hide
Query:  AQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP--NLDIPPVEVVSDSTGVINMLNK
        A+W  P   SWKLN DA+     N GG+GWI+RD  G  I +  + I     I  L++ AI EGLR++      RP       P+ + SDS   I++L++
Subjt:  AQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP--NLDIPPVEVVSDSTGVINMLNK

Query:  VDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
           DQ+EI +L+EEI + + D   +S  H  R  N  AH LAR
Subjt:  VDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

TrEMBL top hitse value%identityAlignment
A0A2N9J7E4 Uncharacterized protein8.0e-1124.49Show/hide
Query:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPILMWKRKF-----------------EETSTHS--------------------------LW
        +D I W  +  G +SV+S Y L +   R  +  +S + +P  +WKR +                 +   T+S                          LW
Subjt:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPILMWKRKF-----------------EETSTHS--------------------------LW

Query:  NSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLNVALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRI
        N     ++NH +   P+ + Y+          + YL V  E K    K      +W LP    +K+N D +  K  N GG+G +IRD +G  I + ++++
Subjt:  NSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLNVALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRI

Query:  SGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
         G   +++++  A         +I A    +D   VEV  D+  +I  LN      +    ++E+ +  I D+  IS +H +RS N  AH LAR
Subjt:  SGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

A0A6J1CP26 uncharacterized protein LOC1110134121.6e-1436.36Show/hide
Query:  NVALEGKPS-------RSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP
        N  L+GK +       R     + AQW  P   SWKLN +A+     N GG+GWI+RD  G  I +  + I     I  L++ AI EGLR+   IR    
Subjt:  NVALEGKPS-------RSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP

Query:  NLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
             P+ + SDS   I++L++   DQ+EI +L+EEI + + D   +S  H  R  N  AH LAR
Subjt:  NLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-1235.37Show/hide
Query:  KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN
        K   +  +W  P    W LN DAS   S +RGG+GWIIR   G  + +GN+ +     +KLL+  AILEGLR+L  +   R      P+ + +DS  V +
Subjt:  KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN

Query:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
        +LN+   D ++  ++VEEI         ++FA   R  N  AH LA+
Subjt:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

A0A6J1DSV1 uncharacterized protein LOC1110236083.5e-1438.46Show/hide
Query:  AQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP--NLDIPPVEVVSDSTGVINMLNK
        A+W  P   SWKLN DA+     N GG+GWI+RD  G  I +  + I     I  L++ AI EGLR++      RP       P+ + SDS   I++L++
Subjt:  AQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRP--NLDIPPVEVVSDSTGVINMLNK

Query:  VDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
           DQ+EI +L+EEI + + D   +S  H  R  N  AH LAR
Subjt:  VDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

Q2R6V8 Retrotransposon protein, putative, unclassified1.0e-1028.57Show/hide
Query:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPIL------MWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLN
        +D + W+PD  G+FSV+SAYHLA+S   N   S+S   +  L      +WK K  +      W +  +         + N E+  +              
Subjt:  KDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPIL------MWKRKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLN

Query:  VALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTI---CSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP
                  K Q     W  P  G  KLN+D S   S N+GG+G I+R+++GS I   C   +R S     +LL   A  EG     +I A +  L   
Subjt:  VALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTI---CSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIP

Query:  PVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILA
        P+ + +DS   +N+    +N +SE++ L+ EI   I     I+     R QN  +H LA
Subjt:  PVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-0629.94Show/hide
Query:  LEGKPSRSK-NQTSHAQWILPAPGSW-KLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVE
        LEGK S  +  +    QW  P P  W K N DA+      R G+GWI+R+ SG  +  G + +    P     + A LE LR   V+  SR N     + 
Subjt:  LEGKPSRSK-NQTSHAQWILPAPGSW-KLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVE

Query:  VVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
          SD+  ++N+LN  D+    +   +E+I++ +  +  + F    R  N  A  +AR
Subjt:  VVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.2e-0425Show/hide
Query:  KPSRS-KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSD
        K SR+ K Q   A+W+       K N D S    +   G+ WIIR+S G+ +  G  +  G   IK  +  A++  ++          +L    VE   D
Subjt:  KPSRS-KNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSD

Query:  STGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILARFVV
        +   +N L +       + + +E I+++   +  + F    R QNV   +LA+  V
Subjt:  STGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILARFVV

AT4G29090.1 Ribonuclease H-like superfamily protein3.8e-0527.21Show/hide
Query:  NQTSHAQWILPAPGSW-KLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN
        N++S  +W  P P  W K N DA+  +   R G+GW++R+  G     G + +    P     + A LE +R   V+  SR   +    E  SDS  +I 
Subjt:  NQTSHAQWILPAPGSW-KLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVIN

Query:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
        +LN  D     +   +++++R +  +  + F    R  N  A  +AR
Subjt:  MLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.5e-0523.68Show/hide
Query:  SRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVV--SDS
        +R+ + + + +W  P     K N DAS  +     G+GWI+R+S G+ I  G  +  G         R   E      +I A + +      +V+   D+
Subjt:  SRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNKRISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVV--SDS

Query:  TGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR
          +  M+N   +    +   ++ I+ +I  + +I F+   R QN  A  LA+
Subjt:  TGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTACGAGACCAAGCCAAGGAGGCTCAAGCTGCACAATCCAATCAAATTGATGAAGATTGTTTAACACCTCTAGATGATGGCGACCAATACGTTCAAAATGTGGG
TGATCTTCAAAATCAAGAAGAGGAAGGGACAAAAGACGAGGTTAGTATAAAAGACAAAGGGCATGGTCGACGGGGAGCAAATTTCAAAGACGACATTATTTGGAACCCTG
ATCCTAAAGGAATCTTTTCGGTCAAAAGTGCTTACCATTTGGCTATTTCATTCCAAAGAAATCACAAAGTCTCTACTTCTTTTGAGGGAGAGCCGATCCTAATGTGGAAG
AGGAAATTCGAGGAGACCTCCACTCACTCTCTGTGGAATTCTGTGGAATCTGAGGAACAAAATCATTCACAAAGCAGCCAACCCAACTTTGAAAGTTATAATCTCAGCAG
TGGAAGCAAAGCGTCGGAAGGGGAGAATTACCTCAATGTCGCCCTAGAGGGGAAGCCTTCAAGATCGAAGAACCAGACGAGTCATGCCCAATGGATCCTTCCCGCTCCTG
GTTCATGGAAGCTCAATGTGGATGCGTCTTGCGTAAAATCCCAAAACAGAGGAGGGGTTGGATGGATCATTCGTGACTCCTCGGGGTCTACAATCTGCTCAGGCAACAAA
AGGATTTCCGGAAATTGGCCTATCAAATTGCTAGATATGAGGGCGATTCTCGAAGGTCTGCGGAGCTTACCGGTTATCAGAGCTTCGCGCCCAAATCTTGACATTCCGCC
TGTCGAGGTGGTGTCCGATTCAACCGGAGTCATCAATATGCTCAACAAGGTAGATAATGATCAATCGGAGATTTCGTTTTTGGTTGAAGAAATCGAGCGCTTCATTGTCG
ATTACAATAACATCTCCTTCGCCCACAACCAGCGTTCGCAAAATGTTGAAGCGCATATTCTGGCGCGTTTTGTTGTATTCGGGGTTGATGGGAATTTTAGTCGGGTTTTG
GAGTCTTCTTCCACTTCGGAAGAAGAAGTTTTTTTGTTGGGTCGGGTCGCACCCGAACCCTCAAGCCCCCTCCCAAGGGTGGCAGTTGTACCGTCCTTTTCCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTACGAGACCAAGCCAAGGAGGCTCAAGCTGCACAATCCAATCAAATTGATGAAGATTGTTTAACACCTCTAGATGATGGCGACCAATACGTTCAAAATGTGGG
TGATCTTCAAAATCAAGAAGAGGAAGGGACAAAAGACGAGGTTAGTATAAAAGACAAAGGGCATGGTCGACGGGGAGCAAATTTCAAAGACGACATTATTTGGAACCCTG
ATCCTAAAGGAATCTTTTCGGTCAAAAGTGCTTACCATTTGGCTATTTCATTCCAAAGAAATCACAAAGTCTCTACTTCTTTTGAGGGAGAGCCGATCCTAATGTGGAAG
AGGAAATTCGAGGAGACCTCCACTCACTCTCTGTGGAATTCTGTGGAATCTGAGGAACAAAATCATTCACAAAGCAGCCAACCCAACTTTGAAAGTTATAATCTCAGCAG
TGGAAGCAAAGCGTCGGAAGGGGAGAATTACCTCAATGTCGCCCTAGAGGGGAAGCCTTCAAGATCGAAGAACCAGACGAGTCATGCCCAATGGATCCTTCCCGCTCCTG
GTTCATGGAAGCTCAATGTGGATGCGTCTTGCGTAAAATCCCAAAACAGAGGAGGGGTTGGATGGATCATTCGTGACTCCTCGGGGTCTACAATCTGCTCAGGCAACAAA
AGGATTTCCGGAAATTGGCCTATCAAATTGCTAGATATGAGGGCGATTCTCGAAGGTCTGCGGAGCTTACCGGTTATCAGAGCTTCGCGCCCAAATCTTGACATTCCGCC
TGTCGAGGTGGTGTCCGATTCAACCGGAGTCATCAATATGCTCAACAAGGTAGATAATGATCAATCGGAGATTTCGTTTTTGGTTGAAGAAATCGAGCGCTTCATTGTCG
ATTACAATAACATCTCCTTCGCCCACAACCAGCGTTCGCAAAATGTTGAAGCGCATATTCTGGCGCGTTTTGTTGTATTCGGGGTTGATGGGAATTTTAGTCGGGTTTTG
GAGTCTTCTTCCACTTCGGAAGAAGAAGTTTTTTTGTTGGGTCGGGTCGCACCCGAACCCTCAAGCCCCCTCCCAAGGGTGGCAGTTGTACCGTCCTTTTCCTCTTAA
Protein sequenceShow/hide protein sequence
MDLRDQAKEAQAAQSNQIDEDCLTPLDDGDQYVQNVGDLQNQEEEGTKDEVSIKDKGHGRRGANFKDDIIWNPDPKGIFSVKSAYHLAISFQRNHKVSTSFEGEPILMWK
RKFEETSTHSLWNSVESEEQNHSQSSQPNFESYNLSSGSKASEGENYLNVALEGKPSRSKNQTSHAQWILPAPGSWKLNVDASCVKSQNRGGVGWIIRDSSGSTICSGNK
RISGNWPIKLLDMRAILEGLRSLPVIRASRPNLDIPPVEVVSDSTGVINMLNKVDNDQSEISFLVEEIERFIVDYNNISFAHNQRSQNVEAHILARFVVFGVDGNFSRVL
ESSSTSEEEVFLLGRVAPEPSSPLPRVAVVPSFSS