; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028589 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028589
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD repeat-containing protein 43
Genome locationscaffold7:13675588..13676669
RNA-Seq ExpressionSpg028589
SyntenySpg028589
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593991.1 WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2083.75Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEVDDVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
KAG7026332.1 WD repeat-containing protein 43 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-2082.5Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED D+EVDDVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
XP_022930515.1 WD repeat-containing protein 43 [Cucurbita moschata]1.5e-2083.75Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEVDDVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
XP_023000148.1 WD repeat-containing protein 43 [Cucurbita maxima]4.7e-1981.25Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DE  DEEV DVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
XP_023515262.1 WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]3.3e-2080.72Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDED---GDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED    DEEVDDVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDED---GDEEVDDVLYGEEEYESELSSDDEN
TrEMBL top hitse value%identityAlignment
A0A1S3C7V9 LOW QUALITY PROTEIN: WD repeat-containing protein 436.6e-1980.49Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERAS NKTDQ I+   EI  SES  D+DE+ DEEVDDVLYGEEE ESELSSDDEN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDEEVDDVLYGEEEYESELSSDDEN
A0A5D3BUY7 WD repeat-containing protein 436.6e-1980.49Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERAS NKTDQ I+   EI  SES  D+DE+ DEEVDDVLYGEEE ESELSSDDEN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSES--DDDEDGDEEVDDVLYGEEEYESELSSDDEN
A0A6J1DS09 WD repeat-containing protein 43 isoform X21.9e-1880Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASAN TD  I++   ID +ESDDD   DEEVDDVLYGEEEYESELSSD EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
A0A6J1EX27 WD repeat-containing protein 437.1e-2183.75Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K+TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DED DEEVDDVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
A0A6J1KLT8 WD repeat-containing protein 432.3e-1981.25Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
        K TKSKETAVQ LLQLSGRLQLVLAQIERASANKTDQ +R   EID  ES +DE  DEEV DVLYGEEEYESELSSD+EN
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11240.1 transducin family protein / WD-40 repeat family protein6.6e-1155.13Show/hide
Query:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDD
        K+TKS+ TA+Q LLQLSGRLQLV AQI +A+ ++T Q+   + EID S     ED +E+V+D  YGE + ES+LSSDD
Subjt:  KMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGCCTTTTGGGGTGGGTATGTCGGCTGGTATGTGGTCAATGGGCTTGGCCTTTTCTGGTGGTGGTAAGATGACTAAATCCAAAGAAACTGCGGTTCAATCTCT
TCTTCAATTATCAGGTCGATTGCAACTGGTGTTGGCACAAATTGAAAGGGCATCGGCCAACAAAACCGATCAAATGATACGCCAGAATCACGAAATAGATAGAAGTGAGA
GTGACGATGACGAAGACGGAGATGAAGAAGTCGACGATGTTCTTTACGGGGAAGAAGAATATGAATCTGAATTAAGTAGTGATGATGAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAGCCTTTTGGGGTGGGTATGTCGGCTGGTATGTGGTCAATGGGCTTGGCCTTTTCTGGTGGTGGTAAGATGACTAAATCCAAAGAAACTGCGGTTCAATCTCT
TCTTCAATTATCAGGTCGATTGCAACTGGTGTTGGCACAAATTGAAAGGGCATCGGCCAACAAAACCGATCAAATGATACGCCAGAATCACGAAATAGATAGAAGTGAGA
GTGACGATGACGAAGACGGAGATGAAGAAGTCGACGATGTTCTTTACGGGGAAGAAGAATATGAATCTGAATTAAGTAGTGATGATGAGAATTAG
Protein sequenceShow/hide protein sequence
MGKPFGVGMSAGMWSMGLAFSGGGKMTKSKETAVQSLLQLSGRLQLVLAQIERASANKTDQMIRQNHEIDRSESDDDEDGDEEVDDVLYGEEEYESELSSDDEN