; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028642 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028642
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold7:16509954..16515336
RNA-Seq ExpressionSpg028642
SyntenySpg028642
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]1.4e-3055.26Show/hide
Query:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR
        +V+P+S  +F+V+DG   F+VKL+  S SC  WD++EIPCAHAL+V+R  NLN Y+FV  YY++  LS+TY G V P GNH++WS +  N N LPPV +R
Subjt:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR

Query:  QAGRPRKQRMLSIG
         AGRPRK+R+ SIG
Subjt:  QAGRPRKQRMLSIG

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]6.5e-3155.26Show/hide
Query:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR
        +V+P+S  +F+V+DG   F+VKL+  S SC  WD++EIPCAHAL+V+R  NLN Y+FV  YY++  LS+TY G V P GNH++WS ++ N N LPPV +R
Subjt:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR

Query:  QAGRPRKQRMLSIG
         AGRPRK+R+ SIG
Subjt:  QAGRPRKQRMLSIG

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]1.9e-3865.6Show/hide
Query:  RSFKPRIASKALVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDG
        RSFK        VDPI+NE++KVIDGDN+F+V L  KS SCRVWD+ EIPCAHA  V+ G NL+ Y+FVLDYYF  TL STY+G V+P GNHS+W SID 
Subjt:  RSFKPRIASKALVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDG

Query:  NVNALPPVVKRQAGRPRKQRMLSIG
         VN LPP+VKR  GRPRKQR+LSIG
Subjt:  NVNALPPVVKRQAGRPRKQRMLSIG

XP_038887651.1 uncharacterized protein LOC120077739 [Benincasa hispida]1.3e-3159.32Show/hide
Query:  RSFKPRIASKALVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDG
        RSFK        VDPI+N+++KV+ GDN+ +V L SK  SCRVW++ EIPCAHA  ++RG NL+ Y+FVLDYYF  TL STY+G V+P GNHSE  S+D 
Subjt:  RSFKPRIASKALVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDG

Query:  NVNALPPVVKRQAGRPRK
         VN LPP+VKR AGRP K
Subjt:  NVNALPPVVKRQAGRPRK

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]3.0e-3662.83Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ
        VD I+NE++KV+DGDN+++V + SKS SC  WD++EIPCAHA  VL   NL++Y+FV DYYFS T SSTY+  +HP GNHS+WSS+D + N LPP+VKRQ
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ

Query:  AGRPRKQRMLSIG
         GRPRKQR+LS+G
Subjt:  AGRPRKQRMLSIG

TrEMBL top hitse value%identityAlignment
A0A1S3CSI6 uncharacterized protein LOC1035044079.2e-3159.29Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ
        V+ I++ +F+VI+G   FIV+LD KS +CRVWD+D+IPCAHAL VLRG+++NTYSFV  Y+ S TL STY G V P GNH+ W SI    N LPP  KR+
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ

Query:  AGRPRKQRMLSIG
        AG+ +KQR+LSIG
Subjt:  AGRPRKQRMLSIG

A0A5A7TVL2 ZnF_PMZ domain-containing protein4.5e-3054.39Show/hide
Query:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR
        +V+P+S  +F+V+DG   F+VKL+  S SC  WD++EIPCA AL+V+R  NLN Y+FV  YY++  LS+TY G V P GNH++WS ++ N N LPPV +R
Subjt:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR

Query:  QAGRPRKQRMLSIG
         AGRPRK+R+ SIG
Subjt:  QAGRPRKQRMLSIG

A0A5D3BD68 SWIM-type domain-containing protein7.0e-3155.26Show/hide
Query:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR
        +V+P+S  +F+V+DG   F+VKL+  S SC  WD++EIPCAHAL+V+R  NLN Y+FV  YY++  LS+TY G V P GNH++WS +  N N LPPV +R
Subjt:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR

Query:  QAGRPRKQRMLSIG
         AGRPRK+R+ SIG
Subjt:  QAGRPRKQRMLSIG

A0A5D3BVP4 SWIM-type domain-containing protein3.1e-3155.26Show/hide
Query:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR
        +V+P+S  +F+V+DG   F+VKL+  S SC  WD++EIPCAHAL+V+R  NLN Y+FV  YY++  LS+TY G V P GNH++WS ++ N N LPPV +R
Subjt:  LVDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKR

Query:  QAGRPRKQRMLSIG
         AGRPRK+R+ SIG
Subjt:  QAGRPRKQRMLSIG

A0A5D3C7L7 Uncharacterized protein4.5e-3056.25Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ
        VDPIS  +++V +G+  FIVKL+ +  SCRVWD++EIPCAHALVVLR  NL+TYS+V ++Y+  TLS TY G + P G+H +W  +D  +  LPPV KRQ
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQ

Query:  AGRPRKQRMLSI
        AGRP KQR+ S+
Subjt:  AGRPRKQRMLSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATCTAGTGCTATTGTTGGATATGAGAAATTGTTGTCCGTTGATTCTTCCTCATCTTGTTCTACTAGTAATGTTGATTTTCAAGTTATTACTGATGTGCATTTTGATGG
GGATTTAAAGGAGAATGATCTTTTTGGAAGATGGTTGTCAATGTTTCCTTATTTGGCTAGCGTCTCGACTCTGATGATGGGCGTCTCGACGCTGATGAGGCTCCAGAGGC
AAAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAAGCCCCGAATTGCTTCCAAAGCTCTGGTTGATCCTATTAGTAACGAACAATTCAAAGTAATTGACGGAGATAAC
TATTTCATTGTGAAGTTGGATTCGAAATCATATAGTTGTCGTGTTTGGGATATTGATGAAATCCCATGTGCTCATGCACTTGTTGTTCTTCGTGGGCAGAATTTGAATAC
TTATTCTTTTGTCTTAGATTATTACTTTTCAAGAACATTGTCATCAACTTATAGAGGTTTTGTTCATCCCGCCGGTAATCATTCTGAATGGAGCTCTATAGATGGGAACG
TGAATGCGTTGCCTCCAGTTGTTAAACGTCAAGCAGGAAGACCTAGAAAACAGAGGATGCTATCAATTGGTCCATTAGGTCCACCTGCTAGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATATCTAGTGCTATTGTTGGATATGAGAAATTGTTGTCCGTTGATTCTTCCTCATCTTGTTCTACTAGTAATGTTGATTTTCAAGTTATTACTGATGTGCATTTTGATGG
GGATTTAAAGGAGAATGATCTTTTTGGAAGATGGTTGTCAATGTTTCCTTATTTGGCTAGCGTCTCGACTCTGATGATGGGCGTCTCGACGCTGATGAGGCTCCAGAGGC
AAAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAAGCCCCGAATTGCTTCCAAAGCTCTGGTTGATCCTATTAGTAACGAACAATTCAAAGTAATTGACGGAGATAAC
TATTTCATTGTGAAGTTGGATTCGAAATCATATAGTTGTCGTGTTTGGGATATTGATGAAATCCCATGTGCTCATGCACTTGTTGTTCTTCGTGGGCAGAATTTGAATAC
TTATTCTTTTGTCTTAGATTATTACTTTTCAAGAACATTGTCATCAACTTATAGAGGTTTTGTTCATCCCGCCGGTAATCATTCTGAATGGAGCTCTATAGATGGGAACG
TGAATGCGTTGCCTCCAGTTGTTAAACGTCAAGCAGGAAGACCTAGAAAACAGAGGATGCTATCAATTGGTCCATTAGGTCCACCTGCTAGCTCATAA
Protein sequenceShow/hide protein sequence
ISSAIVGYEKLLSVDSSSSCSTSNVDFQVITDVHFDGDLKENDLFGRWLSMFPYLASVSTLMMGVSTLMRLQRQNGHFTLRFRSFKPRIASKALVDPISNEQFKVIDGDN
YFIVKLDSKSYSCRVWDIDEIPCAHALVVLRGQNLNTYSFVLDYYFSRTLSSTYRGFVHPAGNHSEWSSIDGNVNALPPVVKRQAGRPRKQRMLSIGPLGPPASS