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Spg028645 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028645
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Genome locationscaffold7:10874004..10876942
RNA-Seq ExpressionSpg028645
SyntenySpg028645
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QST20363.1 RNA polymerase beta' subunit [Orostachys japonica]8.2e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

XP_042013051.1 DNA-directed RNA polymerase subunit beta' [Salvia splendens]2.8e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGKWVDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

YP_009671372.1 RNA polymerase beta' subunit [Passiflora obovata]8.2e-3074.44Show/hide
Query:  LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

YP_009862272.1 RNA polymerase beta' subunit [Magnolia ovata]8.2e-3073.91Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNKAYKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

YP_010036623.1 RNA polymerase beta' subunit [Orostachys fimbriata]8.2e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

TrEMBL top hitse value%identityAlignment
A0A2H4YLP0 DNA-directed RNA polymerase subunit beta'6.7e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLPHEIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

A0A2U8U5Q8 DNA-directed RNA polymerase subunit gamma3.9e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRET+LGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

A0A4Y5QG88 DNA-directed RNA polymerase subunit beta'3.9e-3074.44Show/hide
Query:  LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  LFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

A0A6M8ATR4 DNA-directed RNA polymerase subunit beta'3.9e-3073.91Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNKAYKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

A0A7U0KLG4 RNA polymerase beta' subunit3.9e-3072.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSF+DVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLHQCGLPHEIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

SwissProt top hitse value%identityAlignment
A8SE82 DNA-directed RNA polymerase subunit beta'3.1e-3272.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

P60287 DNA-directed RNA polymerase subunit beta'3.1e-3272.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

Q09G55 DNA-directed RNA polymerase subunit beta'3.1e-3272.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

Q0G9M8 DNA-directed RNA polymerase subunit beta'3.1e-3272.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

Q7YJX9 DNA-directed RNA polymerase subunit beta'3.1e-3272.83Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        ES+ C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI

Arabidopsis top hitse value%identityAlignment
AT4G35800.1 RNA polymerase II large subunit3.0e-0626.21Show/hide
Query:  LPFVPPQPHSIFYSLAVIASEKKLTSRLGRLSSPNEFSSCKAKSNLKLTCYFDLKCLESLFCYSRVHGFIVQGAIDNGIRGQP-MRDGHNKAYKSFSDVI
        LP  PP         A   SE  LT +L  +   NE    + K+        +         ++++  F +    DN + GQP       +  KS    +
Subjt:  LPFVPPQPHSIFYSLAVIASEKKLTSRLGRLSSPNEFSSCKAKSNLKLTCYFDLKCLESLFCYSRVHGFIVQGAIDNGIRGQP-MRDGHNKAYKSFSDVI

Query:  EGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIEL
        + K+ R R  L+GK VD+S   VI   P++++ + G+P  IA+ L
Subjt:  EGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIEL

ATCG00180.1 DNA-directed RNA polymerase family protein1.1e-3271.74Show/hide
Query:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI
        E + C  ++    V   +DNGIRGQPMRDGHNK YKSFSDVIEGK+ RFRETLLGK VDYSG  VIVVGPSLSLH+CGLP EIAIELF+ F+
Subjt:  ESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVVGPSLSLHQCGLPHEIAIELFREFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTTTGCTCTACATCGAAAGGTACCATCTTCCCAAAGTTACGCCACCACTTTATAGTCGTCAACTTGAATCTTATTGTCGTCATCGTCGTTATCGTTACTACAC
TTTTGCCATCCATTTCAAAAATCACGGAGGATATGATTTGTCTAGTTGTGGAGAATATGCAAAGGATTTGTCTATTTATATAGAAGCAGCTCAGTGCCGCCGTCGCCTCT
CTCCTGGACACAGCTGCCGCCGCCGTCGTCTTTCTACCGTTTGTGCCGCCGCCACCGTCGTCTTTCTTCCGTTCGTGCCACCGCAGCCTCATTCGATTTTCTACTCCCTT
GCTGTTATTGCATCGGAGAAGAAGCTCACGAGCAGACTTGGGCGGTTGAGCTCACCCAACGAGTTCTCTAGTTGCAAGGCAAAATCCAATCTAAAACTTACCTGCTACTT
TGATTTGAAGTGCCTCGAATCTCTATTTTGTTATTCTAGGGTTCATGGCTTCATTGTTCAAGGAGCAATTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATA
ATAAGGCTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGATGAAAGATTTCGGGAGACTCTGCTTGGCAAATGGGTCGATTATTCAGGATGTTATGTGATTGTTGTA
GGTCCCTCACTTTCATTACATCAATGTGGTTTGCCTCACGAAATCGCAATAGAGCTTTTTCGAGAGTTTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTTTGCTCTACATCGAAAGGTACCATCTTCCCAAAGTTACGCCACCACTTTATAGTCGTCAACTTGAATCTTATTGTCGTCATCGTCGTTATCGTTACTACAC
TTTTGCCATCCATTTCAAAAATCACGGAGGATATGATTTGTCTAGTTGTGGAGAATATGCAAAGGATTTGTCTATTTATATAGAAGCAGCTCAGTGCCGCCGTCGCCTCT
CTCCTGGACACAGCTGCCGCCGCCGTCGTCTTTCTACCGTTTGTGCCGCCGCCACCGTCGTCTTTCTTCCGTTCGTGCCACCGCAGCCTCATTCGATTTTCTACTCCCTT
GCTGTTATTGCATCGGAGAAGAAGCTCACGAGCAGACTTGGGCGGTTGAGCTCACCCAACGAGTTCTCTAGTTGCAAGGCAAAATCCAATCTAAAACTTACCTGCTACTT
TGATTTGAAGTGCCTCGAATCTCTATTTTGTTATTCTAGGGTTCATGGCTTCATTGTTCAAGGAGCAATTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATA
ATAAGGCTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGATGAAAGATTTCGGGAGACTCTGCTTGGCAAATGGGTCGATTATTCAGGATGTTATGTGATTGTTGTA
GGTCCCTCACTTTCATTACATCAATGTGGTTTGCCTCACGAAATCGCAATAGAGCTTTTTCGAGAGTTTATATGA
Protein sequenceShow/hide protein sequence
MSVLLYIERYHLPKVTPPLYSRQLESYCRHRRYRYYTFAIHFKNHGGYDLSSCGEYAKDLSIYIEAAQCRRRLSPGHSCRRRRLSTVCAAATVVFLPFVPPQPHSIFYSL
AVIASEKKLTSRLGRLSSPNEFSSCKAKSNLKLTCYFDLKCLESLFCYSRVHGFIVQGAIDNGIRGQPMRDGHNKAYKSFSDVIEGKDERFRETLLGKWVDYSGCYVIVV
GPSLSLHQCGLPHEIAIELFREFI