; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028656 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028656
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold7:13631541..13634105
RNA-Seq ExpressionSpg028656
SyntenySpg028656
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022153143.1 uncharacterized protein LOC111020711 [Momordica charantia]3.0e-3758.39Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV +G    RV+L  RTC C+EF+Y+++PCSHAIA A  RNVN  TLCSPA   E++I +Y EP+YP G   +W  P  F E ++ PPK V RVGR +TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPS GE    +QVHKC RCGN+GHNRKTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

XP_022154803.1 uncharacterized protein LOC111021969 [Momordica charantia]3.3e-3654.74Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV++G    RV+++ +TCTC++F YYEIPCSHAIA A  RN++V TLCS  Y  +++I +Y EP+YP+G   +W  P ++    I PP+ V RVGR +T 
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPS GE   ++QVHKCGRCGN+GHN KTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

XP_022155156.1 uncharacterized protein LOC111022299 [Momordica charantia]2.3e-3757.66Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV++G    RV+L+ ++CTC++F+YY+IPCSHA+ A   RNV++ TLCSP Y  E+++ +YAEPIYP+G   +W  P +F E  I PPK VARVGRR+TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPSAGE    QQ+HK  RCG   HNRKTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

XP_022156830.1 uncharacterized protein LOC111023664 [Momordica charantia]3.9e-3755.8Show/hide
Query:  RMEVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRR
        ++EV +G    RV+L+ RTC C+EF+Y++ PCSHAIAA    NVN  TLCSPAY  +++I +Y EP+YP+G   +W  P +F +  + PP+ V+RVGRR+
Subjt:  RMEVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRR

Query:  TVRIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST
        T+RIPSAGE    +QVHKCG CGN+GHNRKTCR+PL T
Subjt:  TVRIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST

XP_022159268.1 uncharacterized protein LOC111025678 [Momordica charantia]8.7e-3758.82Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        +V +G LD  VDL+   C+CREF+Y++IPCSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+PVG +  W    EF  + + PPK V RVGRR+TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST
        RIPS GE   ++Q  KCGRCG  GHNRKTC EPL+T
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST

TrEMBL top hitse value%identityAlignment
A0A6J1DGQ6 uncharacterized protein LOC1110207111.4e-3758.39Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV +G    RV+L  RTC C+EF+Y+++PCSHAIA A  RNVN  TLCSPA   E++I +Y EP+YP G   +W  P  F E ++ PPK V RVGR +TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPS GE    +QVHKC RCGN+GHNRKTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

A0A6J1DLB0 uncharacterized protein LOC1110219691.6e-3654.74Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV++G    RV+++ +TCTC++F YYEIPCSHAIA A  RN++V TLCS  Y  +++I +Y EP+YP+G   +W  P ++    I PP+ V RVGR +T 
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPS GE   ++QVHKCGRCGN+GHN KTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

A0A6J1DQV1 uncharacterized protein LOC1110222991.1e-3757.66Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        EV++G    RV+L+ ++CTC++F+YY+IPCSHA+ A   RNV++ TLCSP Y  E+++ +YAEPIYP+G   +W  P +F E  I PPK VARVGRR+TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT
        RIPSAGE    QQ+HK  RCG   HNRKTCR+PL TT
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT

A0A6J1DRF6 uncharacterized protein LOC1110236641.9e-3755.8Show/hide
Query:  RMEVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRR
        ++EV +G    RV+L+ RTC C+EF+Y++ PCSHAIAA    NVN  TLCSPAY  +++I +Y EP+YP+G   +W  P +F +  + PP+ V+RVGRR+
Subjt:  RMEVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRR

Query:  TVRIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST
        T+RIPSAGE    +QVHKCG CGN+GHNRKTCR+PL T
Subjt:  TVRIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST

A0A6J1DYC4 uncharacterized protein LOC1110256784.2e-3758.82Show/hide
Query:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV
        +V +G LD  VDL+   C+CREF+Y++IPCSHAIAAA  RN+N  +LC  AY T S IL+YAEPI+PVG +  W    EF  + + PPK V RVGRR+TV
Subjt:  EVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTV

Query:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST
        RIPS GE   ++Q  KCGRCG  GHNRKTC EPL+T
Subjt:  RIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase1.7e-0631.25Show/hide
Query:  VDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKR
        V L++ TCTCR+F+ Y+ PC HA+A      +N        Y  E    +YA    PV  +  W  P + +   + PP +
Subjt:  VDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEPIYPVGPMFEWKRPAEFQEMEILPPKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAATCTTTGTGTGTTACGGTGGTGTATGGAAGGAGAATGAAAGAGATTATGAGGGTGGCTATTTAGCAGGATTGGATGTGAATATTGACATAAGGTATGAAGA
GTTTTTAAGAGAGCTGTATAACGTGAGTGGCATTAACCCCGATCAGTTTGACCTTATAATAAGATGTCTATGCAATTTTGGATCAAGAGTTTCTACTTATTTGATTAGAA
ATGATAGAGAATTAAGATTCTTTCTAAGCGGAGAGGATGCATTTAAATTGCCGTTATACTTATCAATGATTCCGAAAGATGTCCATGGTAGTGGCAGTAACTTAGGTAGT
CATAGCCATATACCACACAATCTCTCACAACCTTTTCCACAACCGCCACCATCATTTGCACAAACTGTACCCTACAATTTGGCCGAAAACATACCATCATCCATTCCCTC
GTATCATCTGACATATGATAACGTATCATCACCAACCCCTATAAGTAATACTTTTGTCCCACTAGACTTAGCCGATGATAATACACCAAATTTTGGGATTGAAGAGAATT
TGTATACTGGTGACGATACACTTAATTACGAGGAACAAGAGTATGATGAAGAGGAAGATGAAAATTGGGAATACAACGAGGAAGATGAAGAATTAGATGAATCATACGAA
GAAGAATCTGAAGCAGATGAATTTGAGGAAGTAGATGGTTATGATGATGACGTTGCAGTAGATGGAGTTGAGGCAGATGGTGGGACAGATGGAGGCAACGAAGTTGAGGA
AGATTTTGCTCCTCTTGCTTCTAGAATGGAAGTATACGAAGGACAACTAGACTTTCGTGTCGACTTGCACCTGAGGACGTGCACTTGTCGAGAGTTTGAGTACTACGAGA
TTCCATGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCCGCATATCACACAGAATCTGTGATCCTATCATATGCAGAACCG
ATATATCCTGTTGGCCCTATGTTTGAGTGGAAGAGACCCGCTGAATTTCAAGAGATGGAGATATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGACGGACTGTTCG
AATACCATCTGCAGGGGAGAGACCTCAAATACAACAAGTTCATAAGTGCGGTCGATGTGGTAACATAGGTCATAACCGCAAAACTTGTCGTGAACCGCTCTCAACGACAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAATCTTTGTGTGTTACGGTGGTGTATGGAAGGAGAATGAAAGAGATTATGAGGGTGGCTATTTAGCAGGATTGGATGTGAATATTGACATAAGGTATGAAGA
GTTTTTAAGAGAGCTGTATAACGTGAGTGGCATTAACCCCGATCAGTTTGACCTTATAATAAGATGTCTATGCAATTTTGGATCAAGAGTTTCTACTTATTTGATTAGAA
ATGATAGAGAATTAAGATTCTTTCTAAGCGGAGAGGATGCATTTAAATTGCCGTTATACTTATCAATGATTCCGAAAGATGTCCATGGTAGTGGCAGTAACTTAGGTAGT
CATAGCCATATACCACACAATCTCTCACAACCTTTTCCACAACCGCCACCATCATTTGCACAAACTGTACCCTACAATTTGGCCGAAAACATACCATCATCCATTCCCTC
GTATCATCTGACATATGATAACGTATCATCACCAACCCCTATAAGTAATACTTTTGTCCCACTAGACTTAGCCGATGATAATACACCAAATTTTGGGATTGAAGAGAATT
TGTATACTGGTGACGATACACTTAATTACGAGGAACAAGAGTATGATGAAGAGGAAGATGAAAATTGGGAATACAACGAGGAAGATGAAGAATTAGATGAATCATACGAA
GAAGAATCTGAAGCAGATGAATTTGAGGAAGTAGATGGTTATGATGATGACGTTGCAGTAGATGGAGTTGAGGCAGATGGTGGGACAGATGGAGGCAACGAAGTTGAGGA
AGATTTTGCTCCTCTTGCTTCTAGAATGGAAGTATACGAAGGACAACTAGACTTTCGTGTCGACTTGCACCTGAGGACGTGCACTTGTCGAGAGTTTGAGTACTACGAGA
TTCCATGCTCTCATGCAATCGCCGCAGCCCGAGACCGTAATGTTAATGTGGCCACTCTTTGTTCCCCCGCATATCACACAGAATCTGTGATCCTATCATATGCAGAACCG
ATATATCCTGTTGGCCCTATGTTTGAGTGGAAGAGACCCGCTGAATTTCAAGAGATGGAGATATTGCCGCCAAAAAGGGTTGCTCGAGTTGGTCGCCGACGGACTGTTCG
AATACCATCTGCAGGGGAGAGACCTCAAATACAACAAGTTCATAAGTGCGGTCGATGTGGTAACATAGGTCATAACCGCAAAACTTGTCGTGAACCGCTCTCAACGACAT
GA
Protein sequenceShow/hide protein sequence
MPRIFVCYGGVWKENERDYEGGYLAGLDVNIDIRYEEFLRELYNVSGINPDQFDLIIRCLCNFGSRVSTYLIRNDRELRFFLSGEDAFKLPLYLSMIPKDVHGSGSNLGS
HSHIPHNLSQPFPQPPPSFAQTVPYNLAENIPSSIPSYHLTYDNVSSPTPISNTFVPLDLADDNTPNFGIEENLYTGDDTLNYEEQEYDEEEDENWEYNEEDEELDESYE
EESEADEFEEVDGYDDDVAVDGVEADGGTDGGNEVEEDFAPLASRMEVYEGQLDFRVDLHLRTCTCREFEYYEIPCSHAIAAARDRNVNVATLCSPAYHTESVILSYAEP
IYPVGPMFEWKRPAEFQEMEILPPKRVARVGRRRTVRIPSAGERPQIQQVHKCGRCGNIGHNRKTCREPLSTT