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Spg028703 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028703
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:10370748..10372523
RNA-Seq ExpressionSpg028703
SyntenySpg028703
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO54692.1 reverse transcriptase [Corchorus capsularis]2.5e-0937.4Show/hide
Query:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV
        W+PP VG +KLN DAA  K+    GLG + RDH+G V+  A+  L F  D+   E+ +I  G++LA   G  +  VESDC   I+ I   S ++ +   +
Subjt:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV

Query:  LMSIWELAPFFADISFFFIPLKFNHEADLLA
        +  I  LA  F  I F  +  K N+ A  LA
Subjt:  LMSIWELAPFFADISFFFIPLKFNHEADLLA

OMO58663.1 reverse transcriptase [Corchorus capsularis]8.6e-1035Show/hide
Query:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS
        L+ + R   W+ P  G WK+N DA+ + S    GLGV+ RD+ G + V  +  L F  D +  E+ +IL G +LAL  G  +  +ESD   AI+ I KK 
Subjt:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS

Query:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA
         +  +  +++  I E+A  F   SF F+  + N  A  LA
Subjt:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA

OMP06477.1 hypothetical protein CCACVL1_01552 [Corchorus capsularis]1.9e-0936.43Show/hide
Query:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS
        L  ++R   W+PPP+G  K+N DA+ +      GLGV+ RD  G V    S  L F  D +  E+ +IL G ++AL +G  +  VESD   AI  I K  
Subjt:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS

Query:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA
         ++ +   ++  I ELA  F   SF F+    N EA++LA
Subjt:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.8e-1340.46Show/hide
Query:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGE-LSILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV
        W  PP  F KLN DAA   SP S+G   + RD+ G +KVV    +D      L E   +L+G++L   M   K+ V+SDC  AI+  LK  I  S V V 
Subjt:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGE-LSILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV

Query:  LMSIWELAPFFADISFFFIPLKFNHEADLLA
        L  IWE++  F  I+F +IP   N  AD++A
Subjt:  LMSIWELAPFFADISFFFIPLKFNHEADLLA

XP_042514390.1 uncharacterized protein LOC122089041 [Macadamia integrifolia]1.0e-1038.41Show/hide
Query:  NRADY--WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGELSILEGMKLALNMGCVKLEVESDCQQAINFIL-KKSII
        N ++Y  W  PP GF K N DAA  +   S GLG++ R H G +    SI   F   +    L+I   +  AL  G  +L VESDC+Q I++I   +S  
Subjt:  NRADY--WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGELSILEGMKLALNMGCVKLEVESDCQQAINFIL-KKSII

Query:  WSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA
          +V VV+  + +L   FA ISF FIP   N   D+LA
Subjt:  WSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA

TrEMBL top hitse value%identityAlignment
A0A1R3G1P9 Reverse transcriptase1.2e-0936.17Show/hide
Query:  RNRADY----WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKK
        RN+A Y    W+PPP+G  K+N D A   S    GLGV+ RD  G + + AS  L+F  D +  E+ ++L G +LA+  G  +   ESD    I  I KK
Subjt:  RNRADY----WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKK

Query:  SIIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA
          I+ +   ++  I +LA  F D +F F+    + EA++LA
Subjt:  SIIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA

A0A1R3G9C4 Reverse transcriptase1.2e-0937.4Show/hide
Query:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV
        W+PP VG +KLN DAA  K+    GLG + RDH+G V+  A+  L F  D+   E+ +I  G++LA   G  +  VESDC   I+ I   S ++ +   +
Subjt:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV

Query:  LMSIWELAPFFADISFFFIPLKFNHEADLLA
        +  I  LA  F  I F  +  K N+ A  LA
Subjt:  LMSIWELAPFFADISFFFIPLKFNHEADLLA

A0A1R3J1E8 Reverse transcriptase2.7e-0934.68Show/hide
Query:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV
        WVPP +G  K+N D +        GLGV+ RD+ G +   AS  L F    +  E+ ++L G ++AL +G ++  VESDC+ AI+ I      W +   +
Subjt:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKSIIWSDVEVV

Query:  LMSIWELAPFFADISFFFIPLKFN
        +  IWELA  F + SF  +  + N
Subjt:  LMSIWELAPFFADISFFFIPLKFN

A0A1R3KHA2 Uncharacterized protein9.3e-1036.43Show/hide
Query:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS
        L  ++R   W+PPP+G  K+N DA+ +      GLGV+ RD  G V    S  L F  D +  E+ +IL G ++AL +G  +  VESD   AI  I K  
Subjt:  LQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFILKKS

Query:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA
         ++ +   ++  I ELA  F   SF F+    N EA++LA
Subjt:  IIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA

A0A6J1BQ49 uncharacterized protein LOC1110047861.6e-0943.68Show/hide
Query:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFI
        W+PP     K+N DAAC  +  STGLG++ RDH G + V  S++L   L+ +  E+  ILE +KLA +    +L VESDCQ+AI  +
Subjt:  WVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGEL-SILEGMKLALNMGCVKLEVESDCQQAINFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGTGCATTGAGGAATACCTGGCTTCATTTCGGCATGCAAATATCACTGCTAAACCTTCTTCCGCCGGTGTAATCATCAACCGTCCGCATCTCCAGGCTCGAAA
TCGTGCTGATTATTGGGTTCCTCCTCCCGTCGGATTCTGGAAGTTAAATAAGGATGCTGCATGTACTAAATCTCCCCCTTCCACTGGTTTGGGCGTGCTTTGCCGAGATC
ATCATGGTGGTGTGAAGGTGGTTGCATCGATCTATTTGGACTTTCGGTTGGATGTGATCTTGGGAGAGCTTAGTATCTTGGAGGGGATGAAGTTGGCTCTGAATATGGGG
TGTGTGAAGCTTGAAGTGGAGTCGGATTGCCAACAAGCCATAAATTTCATTCTTAAAAAATCAATAATTTGGAGTGACGTGGAAGTTGTGCTGATGTCCATCTGGGAATT
GGCTCCTTTTTTTGCTGATATTTCTTTTTTTTTCATCCCACTGAAGTTCAATCACGAAGCGGATCTTCTAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGAGTGCATTGAGGAATACCTGGCTTCATTTCGGCATGCAAATATCACTGCTAAACCTTCTTCCGCCGGTGTAATCATCAACCGTCCGCATCTCCAGGCTCGAAA
TCGTGCTGATTATTGGGTTCCTCCTCCCGTCGGATTCTGGAAGTTAAATAAGGATGCTGCATGTACTAAATCTCCCCCTTCCACTGGTTTGGGCGTGCTTTGCCGAGATC
ATCATGGTGGTGTGAAGGTGGTTGCATCGATCTATTTGGACTTTCGGTTGGATGTGATCTTGGGAGAGCTTAGTATCTTGGAGGGGATGAAGTTGGCTCTGAATATGGGG
TGTGTGAAGCTTGAAGTGGAGTCGGATTGCCAACAAGCCATAAATTTCATTCTTAAAAAATCAATAATTTGGAGTGACGTGGAAGTTGTGCTGATGTCCATCTGGGAATT
GGCTCCTTTTTTTGCTGATATTTCTTTTTTTTTCATCCCACTGAAGTTCAATCACGAAGCGGATCTTCTAGCATAG
Protein sequenceShow/hide protein sequence
MRECIEEYLASFRHANITAKPSSAGVIINRPHLQARNRADYWVPPPVGFWKLNKDAACTKSPPSTGLGVLCRDHHGGVKVVASIYLDFRLDVILGELSILEGMKLALNMG
CVKLEVESDCQQAINFILKKSIIWSDVEVVLMSIWELAPFFADISFFFIPLKFNHEADLLA