; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028728 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028728
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPHD finger protein ALFIN-LIKE 2-like
Genome locationscaffold7:10289649..10290530
RNA-Seq ExpressionSpg028728
SyntenySpg028728
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0042393 - histone binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR021998 - Alfin, N-terminal
IPR045104 - Alfin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463243.1 PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo]3.6e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

XP_011654991.1 PHD finger protein ALFIN-LIKE 2 [Cucumis sativus]3.6e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

XP_022156923.1 PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]2.3e-5995.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS SPR+VEDIFKDYSARR GLVRALTYDVDEFYSLCDPEKENLCLYGH NESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GARLNRNER
Subjt:  LLSVAFYLGARLNRNER

XP_022942896.1 PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata]2.8e-6097.44Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS SPRTVEDIFKDYSARRTGLVRALTYDVD+FYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFYLGARLN NER
Subjt:  LLSVAFYLGARLNRNER

XP_038893084.1 PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]3.6e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

TrEMBL top hitse value%identityAlignment
A0A0A0KP44 Uncharacterized protein1.8e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

A0A1S3CJ59 PHD finger protein ALFIN-LIKE 2-like1.8e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

A0A5D3DUV1 PHD finger protein ALFIN-LIKE 2-like1.8e-6095.73Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS+SPR+VEDIFKDY+ARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFY GA+LNRNER
Subjt:  LLSVAFYLGARLNRNER

A0A6J1FQ81 PHD finger protein ALFIN-LIKE 2-like1.3e-6097.44Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS SPRTVEDIFKDYSARRTGLVRALTYDVD+FYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFYLGARLN NER
Subjt:  LLSVAFYLGARLNRNER

A0A6J1K4Q3 PHD finger protein ALFIN-LIKE 2-like1.3e-6097.44Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MASIS SPRTVEDIFKDYSARRTGLVRALTYDVD+FYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSVAFYLGARLN NER
Subjt:  LLSVAFYLGARLNRNER

SwissProt top hitse value%identityAlignment
B8AMA8 PHD finger protein ALFIN-LIKE 32.7e-5080.17Show/hide
Query:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A ++++PRTVEDIFKDYSARR  LVRALT DVDEF+ LCDP+KENLCLYG  N SWEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYLGARLNRNER
        +SVAF+  ARLN NER
Subjt:  LSVAFYLGARLNRNER

B8B8I3 PHD finger protein ALFIN-LIKE 22.6e-5383.62Show/hide
Query:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PRTVEDIFKD+S RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYLGARLNRNER
        LSVAF+ GARLN NER
Subjt:  LSVAFYLGARLNRNER

Q8H383 PHD finger protein ALFIN-LIKE 22.6e-5383.62Show/hide
Query:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A +S +PRTVEDIFKD+S RR GLVRALT DVDEFY  CDPEKENLCLYGHPN  WEV LPAEEVP ELPEPALGINFARDGM RRDWLSLVAVHSD WL
Subjt:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYLGARLNRNER
        LSVAF+ GARLN NER
Subjt:  LSVAFYLGARLNRNER

Q9FFF5 PHD finger protein ALFIN-LIKE 13.4e-5380.34Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ S++PRTVE+IFKD+S RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSV+ Y GARLNRNER
Subjt:  LLSVAFYLGARLNRNER

Q9SRM4 PHD finger protein ALFIN-LIKE 22.5e-5685.34Show/hide
Query:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++S++PRTVE+IFKDYSARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYLGARLNRNER
        LSV+FY GARLNRNER
Subjt:  LSVAFYLGARLNRNER

Arabidopsis top hitse value%identityAlignment
AT3G11200.1 alfin-like 21.8e-5785.34Show/hide
Query:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL
        A++S++PRTVE+IFKDYSARR  L+RALT DVD+FYS CDPEKENLCLYGHPNESWEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCWL
Subjt:  ASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWL

Query:  LSVAFYLGARLNRNER
        LSV+FY GARLNRNER
Subjt:  LSVAFYLGARLNRNER

AT3G42790.1 alfin-like 39.2e-4672.9Show/hide
Query:  SPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF
        +PRTVE++FKD+  RRT +V+ALT DV EFY  CDPEKENLCLYG PNE WEV LPAEEVP ELPEPALGINFARDG+  ++WLSLVA+HSD WLLSV+F
Subjt:  SPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF

Query:  YLGARLN
        Y G+R +
Subjt:  YLGARLN

AT5G05610.1 alfin-like 12.4e-5480.34Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ S++PRTVE+IFKD+S RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSV+ Y GARLNRNER
Subjt:  LLSVAFYLGARLNRNER

AT5G05610.2 alfin-like 12.4e-5480.34Show/hide
Query:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW
        MA+ S++PRTVE+IFKD+S RR+G +RAL+ DVD+FYSLCDPE ENLCLYGHPN +WEV LPAEEVP ELPEPALGINFARDGM+R+DWLSLVAVHSDCW
Subjt:  MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCW

Query:  LLSVAFYLGARLNRNER
        LLSV+ Y GARLNRNER
Subjt:  LLSVAFYLGARLNRNER

AT5G26210.1 alfin-like 48.4e-4775.24Show/hide
Query:  SPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF
        +PRTVE++F+D+  RR G+++ALT DV EF+ LCDPEKENLCLYGHPNE WEV LPAEEVP ELPEP LGINFARDGM  +DWLSLVAVHSD WLL+VAF
Subjt:  SPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAF

Query:  YLGAR
        + GAR
Subjt:  YLGAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATCTCTGCCAGCCCTCGCACCGTCGAAGACATATTCAAGGATTACAGCGCTCGACGCACTGGCCTTGTGCGAGCCCTCACTTACGATGTCGATGAGTTCTA
CTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCCAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCTG
CGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTTGGTGCT
CGACTCAACCGCAATGAGCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATCTCTGCCAGCCCTCGCACCGTCGAAGACATATTCAAGGATTACAGCGCTCGACGCACTGGCCTTGTGCGAGCCCTCACTTACGATGTCGATGAGTTCTA
CTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCCAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAGCCTG
CGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTTGGTGCT
CGACTCAACCGCAATGAGCGGTAA
Protein sequenceShow/hide protein sequence
MASISASPRTVEDIFKDYSARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGA
RLNRNER