; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028736 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028736
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold7:15914530..15916256
RNA-Seq ExpressionSpg028736
SyntenySpg028736
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]9.4e-2160.4Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC +ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-2161.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]5.5e-2161.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-2061.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R S F+RL +STSKK + STS FDRLK+TNDQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL  L P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-2061.7Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein4.5e-2160.4Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC +ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5A7TQ06 Retrotransposon gag protein2.0e-2161.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5A7VDY3 Ty3-gypsy retrotransposon protein7.7e-2161.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R S F+RL +STSKK + STS FDRLK+TNDQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL  L P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5D3BBF9 Gag protease polyprotein2.7e-2161.39Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL  + P+
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPK

Query:  F
        F
Subjt:  F

A0A5D3D5Q0 Gag protease polyprotein7.7e-2161.7Show/hide
Query:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEE+QC  ST  R SAF+RL +STSKK + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Subjt:  MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATA
GTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGC
GTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAG
TGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGTTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGC
ACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCT
TCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTGCTTCCTTCTTTAAGTTTGAAGGTTCC
CACATTGCGCTATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCC
AGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTACACGTTCGAAATTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTG
CTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAAAAGCCAATTTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAATGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATA
GTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGC
GTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAG
TGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGTTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGTTCACGC
ACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTCT
TCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTGTTGTGCTGCTTCCTTCTTTAAGTTTGAAGGTTCC
CACATTGCGCTATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTTACGCTACGCTGCTTCCTTCACCAAATTCGAAGGTTCTTCGCTGTACTGCTACGCTGCCAGTCC
AGTCTCTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCTACACGTTCGAAATTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTG
CTTTGA
Protein sequenceShow/hide protein sequence
MSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKFEGPYTVRYC
VVPSPSSKVLRCTLLRCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSKFLTRCVAVPSPKVRRFTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALRCSPFS
SSSKVHTLRCFFAKFEGSHATLGCTVVLLPSLSLKVPTLRYCAASFSKFEGSYATLLPSPNSKVLRCTATLPVQSLSKFEGSDATLLPSTRSKFLVLRCFAYLSPNSKVL
L