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Spg028811 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028811
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:18963433..18965067
RNA-Seq ExpressionSpg028811
SyntenySpg028811
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]3.5e-1457.29Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES
        MQSQPLQ+L +T   L  + F L       RP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]6.3e-1667.09Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        MQSQPLQ+L +T     V+ F L       RPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-1357.89Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE
        MQSQPLQ+L +T   L  + F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.9e-1382Show/hide
Query:  VRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        + PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ES
Subjt:  VRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.0e-1387.5Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein3.1e-1667.09Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        MQSQPLQ+L +T     V+ F L       RPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5A7U9X4 DNA/RNA polymerases superfamily protein8.3e-1457.89Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE
        MQSQPLQ+L +T   L  + F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIE

A0A5A7UAH6 CCHC-type domain-containing protein1.4e-1382Show/hide
Query:  VRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        + PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ES
Subjt:  VRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5D3BET3 Uncharacterized protein2.4e-1387.5Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ES
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES

A0A5D3DIM8 Uncharacterized protein1.7e-1457.29Show/hide
Query:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES
        MQSQPLQ+L +T   L  + F L       RP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES
Subjt:  MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTGTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGCCAAGAGGAAATAGGTC
GAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGG
AGTTGTATATTGAGTCC
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTGTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGCCAAGAGGAAATAGGTC
GAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGG
AGTTGTATATTGAGTCC
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLVVIRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES