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Spg028825 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028825
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold7:11533325..11536239
RNA-Seq ExpressionSpg028825
SyntenySpg028825
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-0846.77Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
        W   K E++    K LY +LQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  CM+
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-0950Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
        W   K E++    K LYTELQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  CM+
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]4.3e-0446.15Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP
        W   K E++    K LY ELQTIPG+ ++D L++A +LL D +ML  F+D+P
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP
TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein1.8e-0846.77Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
        W   K E++    K LY +LQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  CM+
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
A0A5A7VG45 Retrotransposon protein2.1e-0950Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
        W   K E++    K LYTELQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  CM+
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQ
A0A5D3C7T4 Uncharacterized protein2.1e-0446.15Show/hide
Query:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP
        W   K E++    K LY ELQTIPG+ ++D L++A +LL D +ML  F+D+P
Subjt:  WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCCACGACCAAGGAGGAGATGGATCGAAAGCGTCGCAAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGTTGGAGGACGGCTTAGTCATCGCACG
GGCTTTACTGGCTGATTCGAGCATGCTGACACACTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCAGTTCGACGTGGAACTCACGTACACCGTACGCG
AGTTTTCTGTTTTTGGTGCGTGTTTCTCCACGGTGGCACCACTTGGAGACGTGTCATTTGATAGGCAAGAAAAGAGGAGAAGAGAAATTGCCGTGCGTAAAAACAGAGGA
AAGGAAAGGAAAGAAGCCGTACTGGTTGCGATCGTGAAGGAAGAGAGGAAGTTCTTCAGCGGAAATGGGTTGAGGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCCACGACCAAGGAGGAGATGGATCGAAAGCGTCGCAAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGTTGGAGGACGGCTTAGTCATCGCACG
GGCTTTACTGGCTGATTCGAGCATGCTGACACACTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCAGTTCGACGTGGAACTCACGTACACCGTACGCG
AGTTTTCTGTTTTTGGTGCGTGTTTCTCCACGGTGGCACCACTTGGAGACGTGTCATTTGATAGGCAAGAAAAGAGGAGAAGAGAAATTGCCGTGCGTAAAAACAGAGGA
AAGGAAAGGAAAGAAGCCGTACTGGTTGCGATCGTGAAGGAAGAGAGGAAGTTCTTCAGCGGAAATGGGTTGAGGGATTAG
Protein sequenceShow/hide protein sequence
MWSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQFDVELTYTVREFSVFGACFSTVAPLGDVSFDRQEKRRREIAVRKNRG
KERKEAVLVAIVKEERKFFSGNGLRD