; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028826 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028826
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationscaffold7:16414172..16415341
RNA-Seq ExpressionSpg028826
SyntenySpg028826
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]5.4e-2631.7Show/hide
Query:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGK---TL
        +EL+ G S WV DCL  AA   N   FW+R RL+ A++ FQVLEN + RF +LSLE+F+ R++ ++I EG +G GW  LAGE+S +L     + +   ++
Subjt:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGK---TL

Query:  KGPIQNVDLRK---EMKDHPEKEGGFNIE-----------------TSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFLQSKSLILAVASL
          P +N +  K   +M      E G ++E                 + W ++K+ +++   I   FK F ANLAVG   +  +  + L        +   
Subjt:  KGPIQNVDLRK---EMKDHPEKEGGFNIE-----------------TSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFLQSKSLILAVASL

Query:  CGGIKEDREMEGDEISMKEACFEAKRNPDGFIPVVSYLRHGGCFFPVRLVVGNQSENEKLKLDGD
        CGG  E+ +       M+E CF+A  N DGF+     + +    F  R  +G   E E   L  D
Subjt:  CGGIKEDREMEGDEISMKEACFEAKRNPDGFIPVVSYLRHGGCFFPVRLVVGNQSENEKLKLDGD

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein6.7e-1449.44Show/hide
Query:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVG
        MEL+ G S  V DCL  AA   NP  FW R+ L  A++ FQVLEN R RF +LSLE+F+ +++ ++I +G KGKG    A E+SV+L+G
Subjt:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVG

A0A0A0LY03 Uncharacterized protein7.9e-1532.75Show/hide
Query:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGKTLKGP
        ++L+LG   WV D L AAA      G W+RK+LD  ++ FQVLEN+  RF ++SL++F+ R++ ++I EG +  GW  LA E  ++ +G  ++   L GP
Subjt:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGKTLKGP

Query:  IQNVDLRKEMKDHPE------KEGGFNIETSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFL
                    HP+      KEG   +  +  + +  I+KE   ++            GWVT LD+  FL
Subjt:  IQNVDLRKEMKDHPE------KEGGFNIETSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFL

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X28.2e-0458.97Show/hide
Query:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLV
        +ELELG S WV DCL AAA+  NP  FWRR+ L++ VL+
Subjt:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLV

A0A5D3CQQ0 Uncharacterized protein2.6e-2631.7Show/hide
Query:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGK---TL
        +EL+ G S WV DCL  AA   N   FW+R RL+ A++ FQVLEN + RF +LSLE+F+ R++ ++I EG +G GW  LAGE+S +L     + +   ++
Subjt:  MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGK---TL

Query:  KGPIQNVDLRK---EMKDHPEKEGGFNIE-----------------TSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFLQSKSLILAVASL
          P +N +  K   +M      E G ++E                 + W ++K+ +++   I   FK F ANLAVG   +  +  + L        +   
Subjt:  KGPIQNVDLRK---EMKDHPEKEGGFNIE-----------------TSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFLQSKSLILAVASL

Query:  CGGIKEDREMEGDEISMKEACFEAKRNPDGFIPVVSYLRHGGCFFPVRLVVGNQSENEKLKLDGD
        CGG  E+ +       M+E CF+A  N DGF+     + +    F  R  +G   E E   L  D
Subjt:  CGGIKEDREMEGDEISMKEACFEAKRNPDGFIPVVSYLRHGGCFFPVRLVVGNQSENEKLKLDGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCGAGTTAGGTGCCTCTAATTGGGTCCATGATTGCTTAGAGGCTGCGGCGAAAACTGGGAACCCCTGTGGTTTTTGGAGGAGGAAGAGATTGGATTCTGCTGT
GTTAGTCTTTCAAGTTTTAGAAAATGTGAGGGACAGGTTTGGGCTTTTGTCCTTGGAAAACTTCAGAAGGAGAAGATCGGTTTTATATATTTTGGAAGGCTTCAAAGGGA
AGGGATGGGGTCGGCTAGCAGGGGAATTATCAGTGGTGCTAGTTGGTCACAATAAATTAGGGAAGACGCTTAAGGGGCCTATCCAAAATGTCGATCTTAGGAAAGAAATG
AAAGATCATCCGGAAAAGGAAGGGGGGTTCAATATTGAAACCTCATGGTTCTCCATCAAGGAAGCCATTCAGAAGGAAATAGCCATAAGGTGGACTTTCAAGCCATTTTA
TGCGAACCTTGCAGTGGGGGGTTGGGTCACAACCCTTGATATATCGTCATTCCTTCAATCCAAAAGCCTGATTTTAGCAGTGGCGAGCTTGTGTGGAGGTATTAAAGAAG
ACAGAGAGATGGAAGGGGATGAGATTTCGATGAAGGAAGCCTGCTTTGAGGCAAAAAGAAACCCGGACGGCTTTATTCCAGTGGTCAGCTACCTCCGCCATGGGGGGTGT
TTCTTCCCAGTCAGATTGGTCGTCGGTAACCAGTCGGAAAACGAGAAGTTGAAGCTTGATGGAGACAGGTCCGGAAAAGCTGAGAGAGTCGTCCTTCACCTGCCAAAGGA
AGCAGTCGTAGGGGGTCAGATGATTCAGGAGGATAGGGATCACGTGAGGTTGACGGGGGAAGAAACTGGGGACAAGAAAGAAGATAATGCTGGGAATTTTGGGTTTAGAA
ATGGGCCTTCAGGCCTGAAGGTAGCAAGCCCAATTCGAATTCTCCAAAGGGGACAACCCAGCCTAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCGAGTTAGGTGCCTCTAATTGGGTCCATGATTGCTTAGAGGCTGCGGCGAAAACTGGGAACCCCTGTGGTTTTTGGAGGAGGAAGAGATTGGATTCTGCTGT
GTTAGTCTTTCAAGTTTTAGAAAATGTGAGGGACAGGTTTGGGCTTTTGTCCTTGGAAAACTTCAGAAGGAGAAGATCGGTTTTATATATTTTGGAAGGCTTCAAAGGGA
AGGGATGGGGTCGGCTAGCAGGGGAATTATCAGTGGTGCTAGTTGGTCACAATAAATTAGGGAAGACGCTTAAGGGGCCTATCCAAAATGTCGATCTTAGGAAAGAAATG
AAAGATCATCCGGAAAAGGAAGGGGGGTTCAATATTGAAACCTCATGGTTCTCCATCAAGGAAGCCATTCAGAAGGAAATAGCCATAAGGTGGACTTTCAAGCCATTTTA
TGCGAACCTTGCAGTGGGGGGTTGGGTCACAACCCTTGATATATCGTCATTCCTTCAATCCAAAAGCCTGATTTTAGCAGTGGCGAGCTTGTGTGGAGGTATTAAAGAAG
ACAGAGAGATGGAAGGGGATGAGATTTCGATGAAGGAAGCCTGCTTTGAGGCAAAAAGAAACCCGGACGGCTTTATTCCAGTGGTCAGCTACCTCCGCCATGGGGGGTGT
TTCTTCCCAGTCAGATTGGTCGTCGGTAACCAGTCGGAAAACGAGAAGTTGAAGCTTGATGGAGACAGGTCCGGAAAAGCTGAGAGAGTCGTCCTTCACCTGCCAAAGGA
AGCAGTCGTAGGGGGTCAGATGATTCAGGAGGATAGGGATCACGTGAGGTTGACGGGGGAAGAAACTGGGGACAAGAAAGAAGATAATGCTGGGAATTTTGGGTTTAGAA
ATGGGCCTTCAGGCCTGAAGGTAGCAAGCCCAATTCGAATTCTCCAAAGGGGACAACCCAGCCTAGGTTAG
Protein sequenceShow/hide protein sequence
MELELGASNWVHDCLEAAAKTGNPCGFWRRKRLDSAVLVFQVLENVRDRFGLLSLENFRRRRSVLYILEGFKGKGWGRLAGELSVVLVGHNKLGKTLKGPIQNVDLRKEM
KDHPEKEGGFNIETSWFSIKEAIQKEIAIRWTFKPFYANLAVGGWVTTLDISSFLQSKSLILAVASLCGGIKEDREMEGDEISMKEACFEAKRNPDGFIPVVSYLRHGGC
FFPVRLVVGNQSENEKLKLDGDRSGKAERVVLHLPKEAVVGGQMIQEDRDHVRLTGEETGDKKEDNAGNFGFRNGPSGLKVASPIRILQRGQPSLG