; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028831 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028831
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold7:13620255..13621379
RNA-Seq ExpressionSpg028831
SyntenySpg028831
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-3153.98Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        EKE+FD WV+++N
Subjt:  EKEVFDAWVKLQN

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]9.8e-3153.1Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        +KE+FD WV++ N
Subjt:  EKEVFDAWVKLQN

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-3153.98Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        EKE+FD WV++ N
Subjt:  EKEVFDAWVKLQN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.0e-3258.33Show/hide
Query:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK
        + PKH WT+ EE K VECLVELV  GGWR DN TFQP YL++L+RMM EK P   I  +STI+  +KSLK+ Y  +++M GP CSGFGWNEE+ CI  E+
Subjt:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK

Query:  EVFDAWVK
        ++FD+W+K
Subjt:  EVFDAWVK

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]9.8e-3147.73Show/hide
Query:  EDATEENLQRYAQTYILNMIGGAEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVM
        ED++E N++        NM     K  KH WT  ++  LVECL++LV +GGWR +N+TF+P YL +++++MKEK P   I  T  +E ++K LK+QY  +
Subjt:  EDATEENLQRYAQTYILNMIGGAEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVM

Query:  SQMLGPGCSGFGWNEEYICIEPEKEVFDAWVK
        ++M+GP CS FGWNEE  CIE EK VFD WVK
Subjt:  SQMLGPGCSGFGWNEEYICIEPEKEVFDAWVK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.5e-3258.33Show/hide
Query:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK
        + PKH WT+ EE K VECLVELV  GGWR DN TFQP YL++L+RMM EK P   I  +STI+  +KSLK+ Y  +++M GP CSGFGWNEE+ CI  E+
Subjt:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK

Query:  EVFDAWVK
        ++FD+W+K
Subjt:  EVFDAWVK

A0A5A7T3X9 Retrotransposon protein7.3e-3253.98Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        EKE+FD WV+++N
Subjt:  EKEVFDAWVKLQN

A0A5A7TXH6 Retrotransposon protein4.7e-3153.1Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        +KE+FD WV++ N
Subjt:  EKEVFDAWVKLQN

A0A5A7U0H7 Retrotransposon protein1.5e-3258.33Show/hide
Query:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK
        + PKH WT+ EE K VECLVELV  GGWR DN TFQP YL++L+RMM EK P   I  +STI+  +KSLK+ Y  +++M GP CSGFGWNEE+ CI  E+
Subjt:  KQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEPEK

Query:  EVFDAWVK
        ++FD+W+K
Subjt:  EVFDAWVK

A0A5A7UHB1 Retrotransposon protein1.6e-3153.98Show/hide
Query:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP
        + + P+H+WTR EE  LVECL+ELV  GGW+ DN TF+P YL++L RMM EK P C + +T+ I+ +IK+LKR +  +++M GP CSGFGWN+E  CI  
Subjt:  AEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQYGVMSQMLGPGCSGFGWNEEYICIEP

Query:  EKEVFDAWVKLQN
        EKE+FD WV++ N
Subjt:  EKEVFDAWVKLQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGCTGGCAATTTAATGATTTTGACCACCTACCAGAAGATGCTACTGAGGAAAATCTCCAACGCTATGCTCAAACATATATACTCAATATGATTGGAGGTGCCGA
AAAACAACCAAAACACATATGGACAAGATTTGAGGAGGCGAAATTAGTCGAATGCCTCGTTGAACTGGTGCACGACGGCGGCTGGAGGGGAGATAACGACACGTTCCAAC
CCGACTATCTATCCCGACTCAAACGAATGATGAAGGAAAAACATCCCACTTGCACTATCGATTCAACGTCAACGATAGAGTACAAGATCAAGTCCCTGAAACGCCAGTAC
GGCGTAATGTCGCAGATGTTGGGTCCAGGTTGTAGTGGGTTTGGGTGGAATGAGGAGTACATATGTATTGAACCTGAGAAAGAAGTGTTTGATGCATGGGTTAAGCTGCA
AAATGACTCCTCAACAAGCTATTTCCTCACTACGAGGAACTGGCGTTCGTGTTTGGGAAGAATCAAGCAAGTGGATTGGGGTGTTCCGTTCCAGCGAAATAAGCAGAAAG
CCACCATGGGGACGATGAGGGTGATTGCAACTTTCAAGGATGGCAAGAATATTACGTCCCAGTGCCTCCAGTGGTTAATCTTGACACCGAGGTCGAGTTTGAGGATGTTC
CCATCACCCCCACTAGTCGACCGAGCACAGCCAGGTCCTCACAGGGACGAAAGAGGAGGCGAGGGTCCTATGAAGCAGAAGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGCTGGCAATTTAATGATTTTGACCACCTACCAGAAGATGCTACTGAGGAAAATCTCCAACGCTATGCTCAAACATATATACTCAATATGATTGGAGGTGCCGA
AAAACAACCAAAACACATATGGACAAGATTTGAGGAGGCGAAATTAGTCGAATGCCTCGTTGAACTGGTGCACGACGGCGGCTGGAGGGGAGATAACGACACGTTCCAAC
CCGACTATCTATCCCGACTCAAACGAATGATGAAGGAAAAACATCCCACTTGCACTATCGATTCAACGTCAACGATAGAGTACAAGATCAAGTCCCTGAAACGCCAGTAC
GGCGTAATGTCGCAGATGTTGGGTCCAGGTTGTAGTGGGTTTGGGTGGAATGAGGAGTACATATGTATTGAACCTGAGAAAGAAGTGTTTGATGCATGGGTTAAGCTGCA
AAATGACTCCTCAACAAGCTATTTCCTCACTACGAGGAACTGGCGTTCGTGTTTGGGAAGAATCAAGCAAGTGGATTGGGGTGTTCCGTTCCAGCGAAATAAGCAGAAAG
CCACCATGGGGACGATGAGGGTGATTGCAACTTTCAAGGATGGCAAGAATATTACGTCCCAGTGCCTCCAGTGGTTAATCTTGACACCGAGGTCGAGTTTGAGGATGTTC
CCATCACCCCCACTAGTCGACCGAGCACAGCCAGGTCCTCACAGGGACGAAAGAGGAGGCGAGGGTCCTATGAAGCAGAAGCGCTAG
Protein sequenceShow/hide protein sequence
MDSWQFNDFDHLPEDATEENLQRYAQTYILNMIGGAEKQPKHIWTRFEEAKLVECLVELVHDGGWRGDNDTFQPDYLSRLKRMMKEKHPTCTIDSTSTIEYKIKSLKRQY
GVMSQMLGPGCSGFGWNEEYICIEPEKEVFDAWVKLQNDSSTSYFLTTRNWRSCLGRIKQVDWGVPFQRNKQKATMGTMRVIATFKDGKNITSQCLQWLILTPRSSLRMF
PSPPLVDRAQPGPHRDERGGEGPMKQKR