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Spg028848 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028848
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:17182620..17183934
RNA-Seq ExpressionSpg028848
SyntenySpg028848
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.1e-0764.29Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0759.09Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-1048.57Show/hide
Query:  GVLGGPHYIVGLVNV--------------EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA
        GV GGPHYIVGLVNV              EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+A
Subjt:  GVLGGPHYIVGLVNV--------------EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA

Query:  GGLGG
        GG GG
Subjt:  GGLGG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]5.4e-0745.35Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGETREDERWPENYSMPKIGLREQKQSKKGLK
        VEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR K A G GG       W ++  MP+   R ++Q++ G++
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGETREDERWPENYSMPKIGLREQKQSKKGLK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0759.09Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase6.9e-0859.09Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.0e-0764.29Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG

A0A5D3CAC6 Uncharacterized protein8.7e-1148.57Show/hide
Query:  GVLGGPHYIVGLVNV--------------EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA
        GV GGPHYIVGLVNV              EIEL VPDTLPTSAESS S+SS             S  +   R+  E        E+DV WLHA+FR K+A
Subjt:  GVLGGPHYIVGLVNV--------------EIELPVPDTLPTSAESSRSSSS-------------STFQEGQRVSLE--------EDDVRWLHAIFRTKLA

Query:  GGLGG
        GG GG
Subjt:  GGLGG

A0A5D3CU23 Retrotrans_gag domain-containing protein2.6e-0745.35Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGETREDERWPENYSMPKIGLREQKQSKKGLK
        VEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR K A G GG       W ++  MP+   R ++Q++ G++
Subjt:  VEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGETREDERWPENYSMPKIGLREQKQSKKGLK

A0A5D3DX39 Reverse transcriptase6.9e-0859.09Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG
        VEIELPVPDTLPTSAESS S+SS+    + E   V +        EDDV WLHA+FR K AGG GG
Subjt:  VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTC
CAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGACAC
GTGAAGACGAACGCTGGCCGGAGAACTACTCAATGCCGAAGATAGGGCTGAGGGAGCAAAAACAGTCGAAAAAGGGGCTAAAGGAGCTTGCAAAAATCGTGGAGAAGAAG
AGGGGAAGATGGAGAAGTTGGTTACCTTCTTATCTTGGGCTACGTGCGGTTAAGAAGAGGGAAAAATTAGGGTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTC
CAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGACAC
GTGAAGACGAACGCTGGCCGGAGAACTACTCAATGCCGAAGATAGGGCTGAGGGAGCAAAAACAGTCGAAAAAGGGGCTAAAGGAGCTTGCAAAAATCGTGGAGAAGAAG
AGGGGAAGATGGAGAAGTTGGTTACCTTCTTATCTTGGGCTACGTGCGGTTAAGAAGAGGGAAAAATTAGGGTTTAGATGA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVGLVNVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGETREDERWPENYSMPKIGLREQKQSKKGLKELAKIVEKK
RGRWRSWLPSYLGLRAVKKREKLGFR