; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028873 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028873
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold5:15211309..15216081
RNA-Seq ExpressionSpg028873
SyntenySpg028873
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026133.1 hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa]1.5e-2857.58Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L+S AKFKIL KIL V+WW++YD SHLNE++I +WFK NAH+SREEEDQFLL KNS+M  + GA SE+DLQAV++ VV   ++N D + +D  E    
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQP
         S SSVND+  D E + Y NFDI DPY +SQP
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQP

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.1e-2048.87Show/hide
Query:  LTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHI---SREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK
        L S   FK LSK LR+KWWEK++ SHL  +KI  WFKAN H+   +R+E++ FLL KN+++  LAGA+++ +L +V+  VV  LSD++D   ED      
Subjt:  LTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHI---SREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK

Query:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQP
         AS +SVNDV DD +YD Y   DI DP+ D+QP
Subjt:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQP

KAA0050626.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.2e-2860.15Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L+S AKFKIL KILRVKWW+KYD S LNE++I +WFK NA +SREEEDQFLLAKNSIM  +AGA SE+DLQAV++ VV   ++N D   +D+ E    
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQPG
         S+SSVND+  D   D Y NFDI D Y DSQ G
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQPG

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.4e-3359.7Show/hide
Query:  LNSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK
        ++ L+S AKFKI  KIL VKWW+KY+ SHL+ED+IT+WFK NA + REEEDQFLLAKNSIM  +AGA SE+DLQA+++ VV  + D++    ED+ E T+
Subjt:  LNSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK

Query:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQPG
        ++S+SSVN+++ D   DLY NFDI DPY DSQPG
Subjt:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQPG

KGN53659.1 hypothetical protein Csa_014527 [Cucumis sativus]2.3e-2655.38Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L++ AKFKIL KILRVKWW   D   +NE+KI +WFK N H+S+EEEDQFLL KNSIM F+AGA SE+DLQ V++ V+ T+ D+D    E++ E T++
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDS
        +S S  ND++ D   D Y NFDI DPY+DS
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDS

TrEMBL top hitse value%identityAlignment
A0A0A0KXT5 Uncharacterized protein1.1e-2655.38Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L++ AKFKIL KILRVKWW   D   +NE+KI +WFK N H+S+EEEDQFLL KNSIM F+AGA SE+DLQ V++ V+ T+ D+D    E++ E T++
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDS
        +S S  ND++ D   D Y NFDI DPY+DS
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDS

A0A5A7TBK1 Retrotransposable element Tf25.4e-2148.87Show/hide
Query:  LTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHI---SREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK
        L S   FK LSK LR+KWWEK++ SHL  +KI  WFKAN H+   +R+E++ FLL KN+++  LAGA+++ +L +V+  VV  LSD++D   ED      
Subjt:  LTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHI---SREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK

Query:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQP
         AS +SVNDV DD +YD Y   DI DP+ D+QP
Subjt:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQP

A0A5A7U8X4 Retrotransposable element Tf22.0e-2860.15Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L+S AKFKIL KILRVKWW+KYD S LNE++I +WFK NA +SREEEDQFLLAKNSIM  +AGA SE+DLQAV++ VV   ++N D   +D+ E    
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQPG
         S+SSVND+  D   D Y NFDI D Y DSQ G
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQPG

A0A5A7UEA0 Retrotransposable element Tf22.1e-3359.7Show/hide
Query:  LNSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK
        ++ L+S AKFKI  KIL VKWW+KY+ SHL+ED+IT+WFK NA + REEEDQFLLAKNSIM  +AGA SE+DLQA+++ VV  + D++    ED+ E T+
Subjt:  LNSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATK

Query:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQPG
        ++S+SSVN+++ D   DLY NFDI DPY DSQPG
Subjt:  VASESSVNDVEDDEEYDLYANFDILDPYYDSQPG

A0A5D3CI63 Uncharacterized protein7.0e-2957.58Show/hide
Query:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV
        + L+S AKFKIL KIL V+WW++YD SHLNE++I +WFK NAH+SREEEDQFLL KNS+M  + GA SE+DLQAV++ VV   ++N D + +D  E    
Subjt:  NSLTSIAKFKILSKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKV

Query:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQP
         S SSVND+  D E + Y NFDI DPY +SQP
Subjt:  ASESSVNDVEDDEEYDLYANFDILDPYYDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTTCTTGAGCTGAAGCCTTATTTATTGGCAACCCTCGGTACGTTTCTCTTACTTCATCTTCTTGCTTCGATATCTTTTGCTTCCTTTTTCGCTTTCATTCTCTGTAA
AACCCTTGAGTCCTTCATGGCAAAAACAAGAGTGAGGAAAGAAAGAGAGAATGAGGAGGAAGAGGTACCTGTTACTCCTAAGGTGCAGAAGGTAAAGGCGAAGAAGAAAA
AAACACCAGAGGAGAAAGAAGCCAAGAGACGAAGACGACAACAGAGGGCTGAGGAACAAGAAAAGGCAACAGAGGTTGTTGCTGCCACAGTTGAAGAAGGAGACCCGCAA
GAACCTGATGTACAAAACCCAGAGGAGGCTGAGCAGAGGGTCGCGGATACAGAAAAAGTTCAAGAGGAGCAAACAGAGGAAGTACGAGAGGAAAATACCGAGGAAGTTCG
AGAAGAAATTACAGAGGAAGTTCAAGAAAAGCAGACCGAGGATGTACAAATGCAACAGGCAGAAGATGTTCAGGTAACGGATAATGAGCCAGTGCAGGAAGCTCAAGTGG
AGGTGATCATGCCAGAAGTACCAAAACGTCGCCGCGTTAAGAGGAAAGCAGGCCGCGCTAGGGTTGTCCGAATTAATACTCCTTCGCCTCCAACCACTGATTCTGAAAGA
GAAAATGCAGGAAGAGAGGAACGAGAAAAGAAGGAAGCTGAGGACAAGGCTAGAGAAGAAGAAGCAAAGAAAGCGGAAAAAGAGATTTTGCCCAAACAAGCGAAAGACAA
GGGCAAAGGTATTGCTGAGGCATCGGGTGAGGCTGACGAGATTGAGGAATCGCGATTTCCGTACAATCGCTTTATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGC
TGAGAAGGGACTTCCTGTTTGAACGAGGATTTGGCGATGATCTGCCATGGTTCTTGAGGACTGGAATAGTGAACCTCGGTTGGAGTCAATTTTGTGCGAAGCCGGAACCT
GTTAATTCCAACATTGTTCGGGAATTTTACGCAAATATTGATGATCAGGAGGAATTTCAGTGGAGATTGTCAAAGACGGAAAAGCGCACATTTCAGGCTGCTTATTTGAA
GAGCGAGGCCAATACATGGATGGGTTTCATCAAGCTGCACTTACTGCAGACAACTCACGACTCAACGGTGTCTCGAGACCGGGTTTTGCTTGCCTTTGCTATTCTTCGTT
CCATGAGTATTGATGTGGGTAAGATAATTTCTTCTGAGATTCTTGATTGCTGGCGGAAAAAGGTGGGGAAGCTGTTTTTCCCCAACACTATCACGATGCTATGCCGAAGG
GCAGGGGTGCCAGAGGATGAGGATGATGTGCCACTAATAGACAAGGGAATAATCGACACACCAAATCTGGCTAGGCTTCAGAGGACGCAGGAAGCACGCCAAGGAGAAAC
CTTTTGCTTGAGCATTTTCTCTGGCCTGGTCGTTGCTGCGGCAAAGAATACTCTGGAGCAGAGCTTGGTTTTGCAGAATGCTCAGAATCTGTTGCTGGGCGACTTGAGGG
AGCAAAATCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAAATTGCAAAACTGAATTCTCTAACATCCATAGCGAAATTCAAGATACTC
AGTAAAATACTGAGAGTAAAATGGTGGGAAAAATATGACTGTTCCCATCTTAATGAAGACAAGATAACGCAGTGGTTTAAAGCCAATGCACATATCTCTCGCGAGGAAGA
AGATCAATTTCTTCTCGCCAAAAACTCAATCATGAAGTTTTTAGCAGGAGCAACATCCGAATCAGACCTCCAAGCCGTCATTCAAATAGTCGTCCAGACACTTTCGGATA
ACGACGATGTTCAAAACGAAGATAATGCTGAAGCCACTAAGGTAGCTTCAGAATCTTCAGTCAATGATGTCGAAGATGACGAAGAATACGACCTGTATGCAAATTTCGAC
ATTTTAGACCCTTACTATGATTCCCAACCAGGATGA
mRNA sequenceShow/hide mRNA sequence
GATTTTCTTGAGCTGAAGCCTTATTTATTGGCAACCCTCGGTACGTTTCTCTTACTTCATCTTCTTGCTTCGATATCTTTTGCTTCCTTTTTCGCTTTCATTCTCTGTAA
AACCCTTGAGTCCTTCATGGCAAAAACAAGAGTGAGGAAAGAAAGAGAGAATGAGGAGGAAGAGGTACCTGTTACTCCTAAGGTGCAGAAGGTAAAGGCGAAGAAGAAAA
AAACACCAGAGGAGAAAGAAGCCAAGAGACGAAGACGACAACAGAGGGCTGAGGAACAAGAAAAGGCAACAGAGGTTGTTGCTGCCACAGTTGAAGAAGGAGACCCGCAA
GAACCTGATGTACAAAACCCAGAGGAGGCTGAGCAGAGGGTCGCGGATACAGAAAAAGTTCAAGAGGAGCAAACAGAGGAAGTACGAGAGGAAAATACCGAGGAAGTTCG
AGAAGAAATTACAGAGGAAGTTCAAGAAAAGCAGACCGAGGATGTACAAATGCAACAGGCAGAAGATGTTCAGGTAACGGATAATGAGCCAGTGCAGGAAGCTCAAGTGG
AGGTGATCATGCCAGAAGTACCAAAACGTCGCCGCGTTAAGAGGAAAGCAGGCCGCGCTAGGGTTGTCCGAATTAATACTCCTTCGCCTCCAACCACTGATTCTGAAAGA
GAAAATGCAGGAAGAGAGGAACGAGAAAAGAAGGAAGCTGAGGACAAGGCTAGAGAAGAAGAAGCAAAGAAAGCGGAAAAAGAGATTTTGCCCAAACAAGCGAAAGACAA
GGGCAAAGGTATTGCTGAGGCATCGGGTGAGGCTGACGAGATTGAGGAATCGCGATTTCCGTACAATCGCTTTATCAATAACCTTGCTCGGGCAAAGTATGTTGAGATGC
TGAGAAGGGACTTCCTGTTTGAACGAGGATTTGGCGATGATCTGCCATGGTTCTTGAGGACTGGAATAGTGAACCTCGGTTGGAGTCAATTTTGTGCGAAGCCGGAACCT
GTTAATTCCAACATTGTTCGGGAATTTTACGCAAATATTGATGATCAGGAGGAATTTCAGTGGAGATTGTCAAAGACGGAAAAGCGCACATTTCAGGCTGCTTATTTGAA
GAGCGAGGCCAATACATGGATGGGTTTCATCAAGCTGCACTTACTGCAGACAACTCACGACTCAACGGTGTCTCGAGACCGGGTTTTGCTTGCCTTTGCTATTCTTCGTT
CCATGAGTATTGATGTGGGTAAGATAATTTCTTCTGAGATTCTTGATTGCTGGCGGAAAAAGGTGGGGAAGCTGTTTTTCCCCAACACTATCACGATGCTATGCCGAAGG
GCAGGGGTGCCAGAGGATGAGGATGATGTGCCACTAATAGACAAGGGAATAATCGACACACCAAATCTGGCTAGGCTTCAGAGGACGCAGGAAGCACGCCAAGGAGAAAC
CTTTTGCTTGAGCATTTTCTCTGGCCTGGTCGTTGCTGCGGCAAAGAATACTCTGGAGCAGAGCTTGGTTTTGCAGAATGCTCAGAATCTGTTGCTGGGCGACTTGAGGG
AGCAAAATCTGTGCTGCAGCAAAGCTGGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAAATTGCAAAACTGAATTCTCTAACATCCATAGCGAAATTCAAGATACTC
AGTAAAATACTGAGAGTAAAATGGTGGGAAAAATATGACTGTTCCCATCTTAATGAAGACAAGATAACGCAGTGGTTTAAAGCCAATGCACATATCTCTCGCGAGGAAGA
AGATCAATTTCTTCTCGCCAAAAACTCAATCATGAAGTTTTTAGCAGGAGCAACATCCGAATCAGACCTCCAAGCCGTCATTCAAATAGTCGTCCAGACACTTTCGGATA
ACGACGATGTTCAAAACGAAGATAATGCTGAAGCCACTAAGGTAGCTTCAGAATCTTCAGTCAATGATGTCGAAGATGACGAAGAATACGACCTGTATGCAAATTTCGAC
ATTTTAGACCCTTACTATGATTCCCAACCAGGATGA
Protein sequenceShow/hide protein sequence
DFLELKPYLLATLGTFLLLHLLASISFASFFAFILCKTLESFMAKTRVRKERENEEEEVPVTPKVQKVKAKKKKTPEEKEAKRRRRQQRAEEQEKATEVVAATVEEGDPQ
EPDVQNPEEAEQRVADTEKVQEEQTEEVREENTEEVREEITEEVQEKQTEDVQMQQAEDVQVTDNEPVQEAQVEVIMPEVPKRRRVKRKAGRARVVRINTPSPPTTDSER
ENAGREEREKKEAEDKAREEEAKKAEKEILPKQAKDKGKGIAEASGEADEIEESRFPYNRFINNLARAKYVEMLRRDFLFERGFGDDLPWFLRTGIVNLGWSQFCAKPEP
VNSNIVREFYANIDDQEEFQWRLSKTEKRTFQAAYLKSEANTWMGFIKLHLLQTTHDSTVSRDRVLLAFAILRSMSIDVGKIISSEILDCWRKKVGKLFFPNTITMLCRR
AGVPEDEDDVPLIDKGIIDTPNLARLQRTQEARQGETFCLSIFSGLVVAAAKNTLEQSLVLQNAQNLLLGDLREQNLCCSKAGSKTATSQLVSQIAKLNSLTSIAKFKIL
SKILRVKWWEKYDCSHLNEDKITQWFKANAHISREEEDQFLLAKNSIMKFLAGATSESDLQAVIQIVVQTLSDNDDVQNEDNAEATKVASESSVNDVEDDEEYDLYANFD
ILDPYYDSQPG