; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028877 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028877
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold5:15009893..15012526
RNA-Seq ExpressionSpg028877
SyntenySpg028877
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61757.1 hypothetical protein VITISV_030741 [Vitis vinifera]6.9e-3539.79Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKS---PTFDRVTSDHYPLALS
        S +YGP+    R DFW EL D+ GL   RW +GGDFNV R S EK  G  +T +M+ F+ +I +  L+D PL++  +T  +       R TSDH+ + L 
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKS---PTFDRVTSDHYPLALS

Query:  FGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLISQLKSLDSIGDESILST
             WGP PFRF+N WL   SF+E   +WW +    GW GH FM KL+ +K +L++WN  +  ++S +  S++S L + D++  E  LS+
Subjt:  FGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLISQLKSLDSIGDESILST

CAN84133.1 hypothetical protein VITISV_000111 [Vitis vinifera]1.9e-3741.62Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CKSPTFDRVTSDH
        ST+YGP+    R DFW EL+D+ GL    W +GGDFNV R S EK  G  +T SMR F+ +I    LLD PLQN ++T         C      R TSDH
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CKSPTFDRVTSDH

Query:  YPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVSQ-LPSLISQLKSLDSIGDESILST
        +P+AL      WGP PFRF+N WL   SF+E  +NWW      GW GH FM +L+ +K +L++WN  +  ++++   S+++ L + D+I  E  L++
Subjt:  YPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVSQ-LPSLISQLKSLDSIGDESILST

KAE8647279.1 hypothetical protein Csa_002929 [Cucumis sativus]8.7e-3843.98Show/hide
Query:  IILRFVTLHRLETLTLHFLMSY---------IYSTIYGPSRRERRADF--WQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANY
        ++LR   L   ++  + ++ SY         +  T+ G     R  DF   +EL DL GLGGD WI GGD N+TRWSWEKSH + +  +M+ FNQWIANY
Subjt:  IILRFVTLHRLETLTLHFLMSY---------IYSTIYGPSRRERRADF--WQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANY

Query:  HLLDIPLQNGTYTCKSPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWN
        HL DI                VT DH+P A+   DI WGPCPFR + +WL    F  +++ WW  N + GWPGHG MMKLK L M  R WN
Subjt:  HLLDIPLQNGTYTCKSPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWN

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.6e-3437.67Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------
        S +YGP+    R DFW EL D+AGL   RW +GGDFNV R S EK  G  +T  M+ F+++I +  L+D PL++ +YT         CK           
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------

Query:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS
                     R TSDH+P+ L      WGP PFRF+N WL   SF+E    WW++    GW GH FM KL+ +K +L++WN T+  ++S +   +++
Subjt:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS

Query:  QLKSLDSIGDESILS
         L + DS+  E  LS
Subjt:  QLKSLDSIGDESILS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.5e-4242.99Show/hide
Query:  TLTLHFLMS----YIYSTIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKSPT-
        +LT++F +S    +  S IYGPS  E    FWQEL DL+ L  + WIL GDFNVTRWSWEKS+GR +T+SM  FN +I +  L+D+PL NG +T    T 
Subjt:  TLTLHFLMS----YIYSTIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKSPT-

Query:  ------------------------FDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITN
                                  R TSDH+P+ L FG   WG  PFRF+N WL  ++F+  L+ WW   PL GWPGHG MMKLK LK  ++ W   +
Subjt:  ------------------------FDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITN

Query:  RNDV-SQLPSLISQLKSLDSI
           + SQ   L + + SLD +
Subjt:  RNDV-SQLPSLISQLKSLDSI

TrEMBL top hitse value%identityAlignment
A0A438I2T6 Transposon TX1 uncharacterized 149 kDa protein2.8e-3437.67Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------
        S +YGP+    R DFW EL D+AGL   RW +GGDFNV R S EK  G  +T  M+ F+++I +  L+D PL++ +YT         CK           
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------

Query:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS
                     R TSDH+P+ L      WGP PFRF+N WL   SF+E    WW++    GW GH FM KL+ +K +L++WN T+  ++S +   +++
Subjt:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS

Query:  QLKSLDSIGDESILS
         L + DS+  E  LS
Subjt:  QLKSLDSIGDESILS

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein1.3e-3437.67Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------
        S +YGP+    R DFW EL D+AGL   RW +GGDFNV R S EK  G  +T  M+ F+++I +  L+D PL++ +YT         CK           
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CK-----------

Query:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS
                     R TSDH+P+ L      WGP PFRF+N WL   SF+E    WW++    GW GH FM KL+ +K +L++WN T+  ++S +   +++
Subjt:  --------SPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLIS

Query:  QLKSLDSIGDESILS
         L + DS+  E  LS
Subjt:  QLKSLDSIGDESILS

A0A6J1E2G6 uncharacterized protein LOC1110254057.4e-4342.99Show/hide
Query:  TLTLHFLMS----YIYSTIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKSPT-
        +LT++F +S    +  S IYGPS  E    FWQEL DL+ L  + WIL GDFNVTRWSWEKS+GR +T+SM  FN +I +  L+D+PL NG +T    T 
Subjt:  TLTLHFLMS----YIYSTIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKSPT-

Query:  ------------------------FDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITN
                                  R TSDH+P+ L FG   WG  PFRF+N WL  ++F+  L+ WW   PL GWPGHG MMKLK LK  ++ W   +
Subjt:  ------------------------FDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITN

Query:  RNDV-SQLPSLISQLKSLDSI
           + SQ   L + + SLD +
Subjt:  RNDV-SQLPSLISQLKSLDSI

A5BTG1 zf-RVT domain-containing protein3.3e-3539.79Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKS---PTFDRVTSDHYPLALS
        S +YGP+    R DFW EL D+ GL   RW +GGDFNV R S EK  G  +T +M+ F+ +I +  L+D PL++  +T  +       R TSDH+ + L 
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYTCKS---PTFDRVTSDHYPLALS

Query:  FGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLISQLKSLDSIGDESILST
             WGP PFRF+N WL   SF+E   +WW +    GW GH FM KL+ +K +L++WN  +  ++S +  S++S L + D++  E  LS+
Subjt:  FGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVS-QLPSLISQLKSLDSIGDESILST

A5C9W0 Reverse transcriptase domain-containing protein9.4e-3841.62Show/hide
Query:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CKSPTFDRVTSDH
        ST+YGP+    R DFW EL+D+ GL    W +GGDFNV R S EK  G  +T SMR F+ +I    LLD PLQN ++T         C      R TSDH
Subjt:  STIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQNGTYT---------CKSPTFDRVTSDH

Query:  YPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVSQ-LPSLISQLKSLDSIGDESILST
        +P+AL      WGP PFRF+N WL   SF+E  +NWW      GW GH FM +L+ +K +L++WN  +  ++++   S+++ L + D+I  E  L++
Subjt:  YPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVSQ-LPSLISQLKSLDSIGDESILST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATGTTCTCTGGAGAGGCTCATCGATCAACAAAATCATATAAAGATGTCCTCCAACAAAAGAAAAGTCTTGTTGTCACCACCCACCCTTCATCATCTGACCCTTC
ACCACAGCCTCTCGACAGTGAGATTATTGTTGTTCAGCGATTCCATCAAAAGGATGATTGGCCTTCTATTCGAAACACCATTCTTGCCAGTGGGATACCATATATTGGTG
ATGTTTGTGGAGGCTTCACCGAAATATCCAACCACACCAGCCGAAAGCTAAATCTCACAGCGGCAAAGATTAAAATCCGGCAAAATTCCATTGGTTTCATCCCGGCCAGA
ATTAAGCTTCATTCATCCCTTGCTGGCAGCGACGTTACAGTGGAAATCAAAGGGTTGACGGCCAGCTTTTTTAAATCAGCGAGATTTGAGGAATCCCCACCATTTTCGGA
ACAAAATAATTCGAAAATTAAGAGTGAGAAATTGGATGGCAAAATTTTTAAACTACTAGAGGAAATCAAATCGCCTCCTAAAAATCAGGAATTCATTCCTAATTTGGCCG
AAACTGCTTCTCCAAAGGATTTATCTCCTTGTCTGGTTTCTCCCCAAACTATATCACAGCCAAGAAGTATTTTGCAAGCGGCAGATCACTCCAATATATCTCCTAAAAAA
AGACAGCACACTCCAATAAAGCCAATGACAAATCCCATCATACTTCGGTTTGTGACCCTACATCGCCTCGAAACTTTGACCTTGCACTTTTTGATGAGTTACATTTACTC
AACTATTTATGGCCCTTCTAGGCGTGAGCGCCGTGCAGATTTTTGGCAAGAACTCCATGATTTGGCTGGTTTAGGTGGTGATCGATGGATCCTTGGAGGGGATTTTAATG
TTACTCGCTGGTCTTGGGAGAAATCTCATGGTCGAAATGTTACTAGGAGCATGCGCACTTTCAACCAATGGATTGCCAATTACCATCTCTTGGACATTCCACTGCAAAAT
GGCACTTACACTTGCAAATCTCCTACGTTTGATAGAGTCACATCAGATCACTACCCTTTAGCTCTTTCTTTTGGAGACATAGCTTGGGGGCCTTGTCCTTTCCGTTTTGA
CAATGCTTGGTTACATATTGAGTCCTTTCGTGAAGTTCTGAAAAATTGGTGGAACCAAAATCCTCTCCAAGGCTGGCCAGGGCACGGTTTTATGATGAAACTCAAGGGAT
TGAAAATGGAACTCAGAAAATGGAACATCACGAATCGTAATGATGTTTCCCAACTACCATCTCTTATTTCTCAATTGAAGAGTTTGGACAGTATTGGGGATGAGAGCATT
TTATCTACATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTATGTTCTCTGGAGAGGCTCATCGATCAACAAAATCATATAAAGATGTCCTCCAACAAAAGAAAAGTCTTGTTGTCACCACCCACCCTTCATCATCTGACCCTTC
ACCACAGCCTCTCGACAGTGAGATTATTGTTGTTCAGCGATTCCATCAAAAGGATGATTGGCCTTCTATTCGAAACACCATTCTTGCCAGTGGGATACCATATATTGGTG
ATGTTTGTGGAGGCTTCACCGAAATATCCAACCACACCAGCCGAAAGCTAAATCTCACAGCGGCAAAGATTAAAATCCGGCAAAATTCCATTGGTTTCATCCCGGCCAGA
ATTAAGCTTCATTCATCCCTTGCTGGCAGCGACGTTACAGTGGAAATCAAAGGGTTGACGGCCAGCTTTTTTAAATCAGCGAGATTTGAGGAATCCCCACCATTTTCGGA
ACAAAATAATTCGAAAATTAAGAGTGAGAAATTGGATGGCAAAATTTTTAAACTACTAGAGGAAATCAAATCGCCTCCTAAAAATCAGGAATTCATTCCTAATTTGGCCG
AAACTGCTTCTCCAAAGGATTTATCTCCTTGTCTGGTTTCTCCCCAAACTATATCACAGCCAAGAAGTATTTTGCAAGCGGCAGATCACTCCAATATATCTCCTAAAAAA
AGACAGCACACTCCAATAAAGCCAATGACAAATCCCATCATACTTCGGTTTGTGACCCTACATCGCCTCGAAACTTTGACCTTGCACTTTTTGATGAGTTACATTTACTC
AACTATTTATGGCCCTTCTAGGCGTGAGCGCCGTGCAGATTTTTGGCAAGAACTCCATGATTTGGCTGGTTTAGGTGGTGATCGATGGATCCTTGGAGGGGATTTTAATG
TTACTCGCTGGTCTTGGGAGAAATCTCATGGTCGAAATGTTACTAGGAGCATGCGCACTTTCAACCAATGGATTGCCAATTACCATCTCTTGGACATTCCACTGCAAAAT
GGCACTTACACTTGCAAATCTCCTACGTTTGATAGAGTCACATCAGATCACTACCCTTTAGCTCTTTCTTTTGGAGACATAGCTTGGGGGCCTTGTCCTTTCCGTTTTGA
CAATGCTTGGTTACATATTGAGTCCTTTCGTGAAGTTCTGAAAAATTGGTGGAACCAAAATCCTCTCCAAGGCTGGCCAGGGCACGGTTTTATGATGAAACTCAAGGGAT
TGAAAATGGAACTCAGAAAATGGAACATCACGAATCGTAATGATGTTTCCCAACTACCATCTCTTATTTCTCAATTGAAGAGTTTGGACAGTATTGGGGATGAGAGCATT
TTATCTACATATTAG
Protein sequenceShow/hide protein sequence
MTMFSGEAHRSTKSYKDVLQQKKSLVVTTHPSSSDPSPQPLDSEIIVVQRFHQKDDWPSIRNTILASGIPYIGDVCGGFTEISNHTSRKLNLTAAKIKIRQNSIGFIPAR
IKLHSSLAGSDVTVEIKGLTASFFKSARFEESPPFSEQNNSKIKSEKLDGKIFKLLEEIKSPPKNQEFIPNLAETASPKDLSPCLVSPQTISQPRSILQAADHSNISPKK
RQHTPIKPMTNPIILRFVTLHRLETLTLHFLMSYIYSTIYGPSRRERRADFWQELHDLAGLGGDRWILGGDFNVTRWSWEKSHGRNVTRSMRTFNQWIANYHLLDIPLQN
GTYTCKSPTFDRVTSDHYPLALSFGDIAWGPCPFRFDNAWLHIESFREVLKNWWNQNPLQGWPGHGFMMKLKGLKMELRKWNITNRNDVSQLPSLISQLKSLDSIGDESI
LSTY