; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028900 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028900
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:16861521..16864411
RNA-Seq ExpressionSpg028900
SyntenySpg028900
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.7e-2434.29Show/hide
Query:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN-------------------------
        L+E+W    LTS E+ ++VD D SA++ T + L   L+ KLLS   ++  V++   K AWK+D     V+++G N                         
Subjt:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN-------------------------

Query:  -----------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKY
                                            N   A RLGNAIG++EDV+S      WG+ LRVRVR ++ +PL RGIK+NLDGPM G WIPI+Y
Subjt:  -----------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKY

Query:  EKLPEFCSFC
        E+LP+F   C
Subjt:  EKLPEFCSFC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.8e-2937.38Show/hide
Query:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN---------------------
        MD   L+ DW K  LTS E+++++D D  AV    Q L   L+GKLL+   ++A+V+ +    AWK++H L VE +G+N                     
Subjt:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN---------------------

Query:  ---------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWI
                                                N   A RLGNAIG + DVD       WGASLR+RV I+I++PLRRGIKIN+DGPM G WI
Subjt:  ---------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWI

Query:  PIKYEKLPEFCSFC
        PI+YE+LP+FC FC
Subjt:  PIKYEKLPEFCSFC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.2e-2333.49Show/hide
Query:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN---------------YNS--
        M +  L+E+W    LTS EE+ ++D D SA   T   L   L+GKL     +   VM+   + AWK++ +  +V+ LG N               Y S  
Subjt:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN---------------YNS--

Query:  -------------------------------------------ENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSW
                                                   + A RLGNA+G +E+ D  +    WG++LRVRV ++IS+PLRRGIK+NLDGP+ G+W
Subjt:  -------------------------------------------ENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSW

Query:  IPIKYEKLPEFCSFC
        IPI+YE+LP+FC  C
Subjt:  IPIKYEKLPEFCSFC

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.7e-1128.29Show/hide
Query:  LSLTSAEEDVSVDADRSAVDRTSQMLG---CCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN------------------------------
        LSLTS EED  V   R   + TS M+G    CL+GKLL+      E M+    + W+   G+QV ++G N                              
Subjt:  LSLTSAEEDVSVDADRSAVDRTSQMLG---CCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN------------------------------

Query:  ------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKYEKLPE
                                       N +  E +GNA+G + D+D ++G   WG ++R+RV +++ +PLRRG+K+ L       W+  KYE+LP 
Subjt:  ------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKYEKLPE

Query:  FCSFC
        +C FC
Subjt:  FCSFC

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]4.4e-1228.84Show/hide
Query:  ALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLG---CCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN----------------------
        +LV+    LSLTS EED  V   R   D TS M+G    CL+GKLL+      E M+    + W+   G+QV ++G N                      
Subjt:  ALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLG---CCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN----------------------

Query:  --------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDG--PMCGSW
                                               N +  + +GNA+G + D+D ++G   WG ++R+RV I++ +PLRRG+K+ L    P+   W
Subjt:  --------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDG--PMCGSW

Query:  IPIKYEKLPEFCSFC
        +  KYE+LP +C FC
Subjt:  IPIKYEKLPEFCSFC

TrEMBL top hitse value%identityAlignment
A0A1R3H2G0 Uncharacterized protein1.1e-1131.61Show/hide
Query:  SLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRNYNSENAER---------------
        S AL   W K +LT  EE   V  D   +  T      CL+GKLLS   +  EVM+      W +  GLQ++++G        E+               
Subjt:  SLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRNYNSENAER---------------

Query:  ------LGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGS-WIPIKYEKLPEFCSFC
              +G ++GV E+VD+      WG  LR+RV++++ +PLRRG+ + +  P  G   I  +YE+LP+FC  C
Subjt:  ------LGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGS-WIPIKYEKLPEFCSFC

A0A2N9H4E7 Uncharacterized protein7.3e-1329.61Show/hide
Query:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQV--------------------------ELLGRN
        L E W + SL+S EE   V+ +   V+ T +     LL KLL+      E  ++     W+  HG  +                          +L  + 
Subjt:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQV--------------------------ELLGRN

Query:  YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPL--RRGIKINLDGPMCGSWIPIKYEKLPEFCSFCVSLTVASGYGYRDYNWISVLHSE
         N E A R+G A+GV E++D  +    WG  +R+RVR++I++PL  R+ +K+  D P+   WI ++YEKLP FC  C  L   S    R+  W       
Subjt:  YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPL--RRGIKINLDGPMCGSWIPIKYEKLPEFCSFCVSLTVASGYGYRDYNWISVLHSE

Query:  ELLAYG
        +++AYG
Subjt:  ELLAYG

A0A6J1BSZ1 uncharacterized protein LOC1110054818.3e-2534.29Show/hide
Query:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN-------------------------
        L+E+W    LTS E+ ++VD D SA++ T + L   L+ KLLS   ++  V++   K AWK+D     V+++G N                         
Subjt:  LVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN-------------------------

Query:  -----------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKY
                                            N   A RLGNAIG++EDV+S      WG+ LRVRVR ++ +PL RGIK+NLDGPM G WIPI+Y
Subjt:  -----------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKY

Query:  EKLPEFCSFC
        E+LP+F   C
Subjt:  EKLPEFCSFC

A0A6J1DU55 uncharacterized protein LOC1110231358.6e-3037.38Show/hide
Query:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN---------------------
        MD   L+ DW K  LTS E+++++D D  AV    Q L   L+GKLL+   ++A+V+ +    AWK++H L VE +G+N                     
Subjt:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKIDHGLQVELLGRN---------------------

Query:  ---------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWI
                                                N   A RLGNAIG + DVD       WGASLR+RV I+I++PLRRGIKIN+DGPM G WI
Subjt:  ---------------------------------------YNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWI

Query:  PIKYEKLPEFCSFC
        PI+YE+LP+FC FC
Subjt:  PIKYEKLPEFCSFC

A0A6J1DX30 uncharacterized protein LOC1110248741.6e-2333.49Show/hide
Query:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN---------------YNS--
        M +  L+E+W    LTS EE+ ++D D SA   T   L   L+GKL     +   VM+   + AWK++ +  +V+ LG N               Y S  
Subjt:  MDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKID-HGLQVELLGRN---------------YNS--

Query:  -------------------------------------------ENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSW
                                                   + A RLGNA+G +E+ D  +    WG++LRVRV ++IS+PLRRGIK+NLDGP+ G+W
Subjt:  -------------------------------------------ENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSW

Query:  IPIKYEKLPEFCSFC
        IPI+YE+LP+FC  C
Subjt:  IPIKYEKLPEFCSFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTACTCGCATGTCTCTACATGAACGACTGGGATCACATCGTTTATCTTGTTCGCAAAGTAGGCCGCATCCATAGTGTTACCAGGATAAGCTTTACGACTGCTAT
TTCAAGGGGTTTTCTGAACATGGATTCTTTAGCCCTTGTTGAGGACTGGTCTAAATTGAGCCTAACCTCTGCAGAAGAAGATGTGTCGGTTGATGCTGATCGTTCGGCTG
TTGATAGAACTAGCCAAATGTTGGGTTGCTGCCTCCTTGGTAAACTCTTGTCTCATCATCATCTTGCTGCAGAGGTTATGCAGAAAAATTATAAGGCGGCATGGAAGATA
GATCATGGATTGCAAGTTGAACTCTTAGGCAGAAATTACAATTCTGAAAACGCGGAACGTCTTGGAAATGCGATAGGAGTATATGAGGATGTGGATAGTCAGAATGGTTT
CCATTATTGGGGTGCTAGCCTACGGGTGAGAGTGAGGATTGAAATCTCTCGGCCTCTACGAAGAGGGATTAAGATTAATCTAGATGGCCCGATGTGTGGAAGCTGGATTC
CGATAAAGTACGAGAAATTACCAGAGTTCTGCTCTTTCTGTGTGAGCCTCACAGTTGCTAGTGGCTATGGATACCGGGACTACAACTGGATCTCCGTCCTCCACTCCGAG
GAGCTTCTTGCGTATGGGTCAATCGGCGTTAACCGCATGAGTGGGAAACAGAAGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTACTCGCATGTCTCTACATGAACGACTGGGATCACATCGTTTATCTTGTTCGCAAAGTAGGCCGCATCCATAGTGTTACCAGGATAAGCTTTACGACTGCTAT
TTCAAGGGGTTTTCTGAACATGGATTCTTTAGCCCTTGTTGAGGACTGGTCTAAATTGAGCCTAACCTCTGCAGAAGAAGATGTGTCGGTTGATGCTGATCGTTCGGCTG
TTGATAGAACTAGCCAAATGTTGGGTTGCTGCCTCCTTGGTAAACTCTTGTCTCATCATCATCTTGCTGCAGAGGTTATGCAGAAAAATTATAAGGCGGCATGGAAGATA
GATCATGGATTGCAAGTTGAACTCTTAGGCAGAAATTACAATTCTGAAAACGCGGAACGTCTTGGAAATGCGATAGGAGTATATGAGGATGTGGATAGTCAGAATGGTTT
CCATTATTGGGGTGCTAGCCTACGGGTGAGAGTGAGGATTGAAATCTCTCGGCCTCTACGAAGAGGGATTAAGATTAATCTAGATGGCCCGATGTGTGGAAGCTGGATTC
CGATAAAGTACGAGAAATTACCAGAGTTCTGCTCTTTCTGTGTGAGCCTCACAGTTGCTAGTGGCTATGGATACCGGGACTACAACTGGATCTCCGTCCTCCACTCCGAG
GAGCTTCTTGCGTATGGGTCAATCGGCGTTAACCGCATGAGTGGGAAACAGAAGCGATGA
Protein sequenceShow/hide protein sequence
MPLLACLYMNDWDHIVYLVRKVGRIHSVTRISFTTAISRGFLNMDSLALVEDWSKLSLTSAEEDVSVDADRSAVDRTSQMLGCCLLGKLLSHHHLAAEVMQKNYKAAWKI
DHGLQVELLGRNYNSENAERLGNAIGVYEDVDSQNGFHYWGASLRVRVRIEISRPLRRGIKINLDGPMCGSWIPIKYEKLPEFCSFCVSLTVASGYGYRDYNWISVLHSE
ELLAYGSIGVNRMSGKQKR