; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028903 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028903
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold5:16030775..16031539
RNA-Seq ExpressionSpg028903
SyntenySpg028903
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.5e-2540.62Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++F T+S+D N H  ++SL+ FH A+    +F S+TIHLL   +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ
         F+  TP   +  L     L  P  +   +G  ++   KYF +KSK L RI+  LP+     +      + V VTNS+VKFS+ S EIILT+
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]2.5e-2945.13Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + +E  +PL++ATSL   +  D A ++FTP  L II SN S + VATL+LS R F  +S+D N    ++SLQPFH A+    +F S+TIHLL T +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRIC
         FE  TP   VP L     L   P Q ++LG + YG +FT+ S++L RI+  LP+  +        TV V VT SQVKFS+ S EIILT+E   C
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRIC

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]8.5e-2540.62Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++F T+S+D N H  ++SL+ FH A+    +F S+TIHLL   +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ
         F+  TP   +  L     L  P  +   +G  ++   KYF +KSK L RI+  LP+     +      + V VTNS+VKFS+ S EIILT+
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]1.7e-2540.7Show/hide
Query:  MLFMRMNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTI
        M    + +++ DPL +ATS    + + EA ++FTP   +IIASN S R VA L+++   F  Y +D N H  RISL+ FH AL       S+TIHLL  I
Subjt:  MLFMRMNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTI

Query:  HQMTLTFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRI
         Q+ L FE+S+   +V H      L   P Q +DLG++ Y K+F+I SKDL R++  LP       +    ++CV  T SQVKFS+ S EI+LT+E ++
Subjt:  HQMTLTFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRI

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]6.5e-2539.06Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + + N DPL++ATS F  ++ D+A ++FTP +  II+S+ S R +ATL+LS ++F ++S+D + H  ++SL+ FH A+    +F S+TIHLL   +Q+ L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ
         F+  TP   +  L     L  P  +   +G  ++  GKYF +KSK L RI+  LP+     +      VCV VTNS+VKFS+ S EI+L +
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.2e-2945.13Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + +E  +PL++ATSL   +  D A ++FTP  L II SN S + VATL+LS R F  +S+D N    ++SLQPFH A+    +F S+TIHLL T +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRIC
         FE  TP   VP L     L   P Q ++LG + YG +FT+ S++L RI+  LP+  +        TV V VT SQVKFS+ S EIILT+E   C
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRIC

A0A1S3CL88 uncharacterized protein LOC1035022504.1e-2540.62Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++F T+S+D N H  ++SL+ FH A+    +F S+TIHLL   +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ
         F+  TP   +  L     L  P  +   +G  ++   KYF +KSK L RI+  LP+     +      + V VTNS+VKFS+ S EIILT+
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ

A0A1S4E4N8 uncharacterized protein LOC1035022638.2e-2640.7Show/hide
Query:  MLFMRMNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTI
        M    + +++ DPL +ATS    + + EA ++FTP   +IIASN S R VA L+++   F  Y +D N H  RISL+ FH AL       S+TIHLL  I
Subjt:  MLFMRMNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTI

Query:  HQMTLTFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRI
         Q+ L FE+S+   +V H      L   P Q +DLG++ Y K+F+I SKDL R++  LP       +    ++CV  T SQVKFS+ S EI+LT+E ++
Subjt:  HQMTLTFENSTPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRI

A0A5D3BV00 Uncharacterized protein8.0e-2134.69Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + +   +PL+++TS     ++D A ++F P +L +I  N S R  ATL+LS R+F+ YS+D + H  ++SL+ FH A+    +F S++IHLL   +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDL----GDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEV
         F+  +   +  H +L    +SPP Q +D+     ++   K+  +KSK L R++  LP+     +      +CV VT SQ+KFS+ S  I+L++EV
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDL----GDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEV

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein4.1e-2540.62Show/hide
Query:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL
        + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++F T+S+D N H  ++SL+ FH A+    +F S+TIHLL   +QM L
Subjt:  MNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTL

Query:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ
         F+  TP   +  L     L  P  +   +G  ++   KYF +KSK L RI+  LP+     +      + V VTNS+VKFS+ S EIILT+
Subjt:  TFENSTPLGRVPHLQLLQPLVSPPLQGQDLG--DIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTCATGCGGATGAATGTTGAAAACCTTGATCCTCTCATGGAAGCAACCTCCCTATTCACTCACTTAACCAGCGACGAAGCCTACCTGGAATTCACGCCATGGAG
GTTGACGATAATTGCCTCAAACCATTCCTCTCGCATCGTTGCAACGCTCAAACTTTCCTTTCGATTCTTCGCAACCTATTCCATCGACCAGAATCCTCACAGATACAGGA
TTTCCCTTCAACCCTTCCACCACGCCCTCTCGGTTGCCCGAAATTTTCATTCAATCACCATTCATCTTCTCCCAACCATACATCAAATGACCCTTACATTTGAGAATTCA
ACACCTTTAGGGCGTGTGCCACACTTGCAGTTGCTACAACCATTGGTATCGCCACCTTTGCAAGGACAGGATTTAGGCGATATCGTATATGGAAAATATTTCACAATTAA
ATCCAAAGATCTAATACGCATTCTATCCACACTACCTATGTTAGGAGAGGCTTTAGTTGTTCTCTTTTTTGTCACAGTTTGTGTTAGGGTAACAAATTCACAAGTCAAAT
TTTCTGTTGGATCTCACGAGATTATTCTTACCCAAGAGGTACGAATTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTCATGCGGATGAATGTTGAAAACCTTGATCCTCTCATGGAAGCAACCTCCCTATTCACTCACTTAACCAGCGACGAAGCCTACCTGGAATTCACGCCATGGAG
GTTGACGATAATTGCCTCAAACCATTCCTCTCGCATCGTTGCAACGCTCAAACTTTCCTTTCGATTCTTCGCAACCTATTCCATCGACCAGAATCCTCACAGATACAGGA
TTTCCCTTCAACCCTTCCACCACGCCCTCTCGGTTGCCCGAAATTTTCATTCAATCACCATTCATCTTCTCCCAACCATACATCAAATGACCCTTACATTTGAGAATTCA
ACACCTTTAGGGCGTGTGCCACACTTGCAGTTGCTACAACCATTGGTATCGCCACCTTTGCAAGGACAGGATTTAGGCGATATCGTATATGGAAAATATTTCACAATTAA
ATCCAAAGATCTAATACGCATTCTATCCACACTACCTATGTTAGGAGAGGCTTTAGTTGTTCTCTTTTTTGTCACAGTTTGTGTTAGGGTAACAAATTCACAAGTCAAAT
TTTCTGTTGGATCTCACGAGATTATTCTTACCCAAGAGGTACGAATTTGCTGA
Protein sequenceShow/hide protein sequence
MLFMRMNVENLDPLMEATSLFTHLTSDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFATYSIDQNPHRYRISLQPFHHALSVARNFHSITIHLLPTIHQMTLTFENS
TPLGRVPHLQLLQPLVSPPLQGQDLGDIVYGKYFTIKSKDLIRILSTLPMLGEALVVLFFVTVCVRVTNSQVKFSVGSHEIILTQEVRIC