; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028911 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028911
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:17527123..17535032
RNA-Seq ExpressionSpg028911
SyntenySpg028911
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6336575.1 unnamed protein product [Miscanthus lutarioriparius]1.1e-1639.68Show/hide
Query:  KGWILEMGLWFYDKAML--LFEEPKGGIYSEDMEFRASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGED--KWIPIT
        K W LE G W + K ++  + + P G      M  +   E IG L+G+V  VD+ D+ +   G+ LR+K+++D+++PL RG+ L  G  G++  KW P+ 
Subjt:  KGWILEMGLWFYDKAML--LFEEPKGGIYSEDMEFRASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGED--KWIPIT

Query:  YEKLSDFCYGCGRLGHTIKECEEQVE
        YE L DFCY CG +GHT + CE Q+E
Subjt:  YEKLSDFCYGCGRLGHTIKECEEQVE

TXG48232.1 hypothetical protein EZV62_027526 [Acer yangbiense]4.3e-1626.4Show/hide
Query:  FSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESD
        F + +TE + D  NI+   F+    + WI + G W+++K ++  E+P G      + F                  R  A+ +   +G+V  +DI  ES 
Subjt:  FSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESD

Query:  PEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKEC--EEQVEAGGRGPFGGRGRWQQSNFDVGVEAETEAHKQPS
          WGR +R+K+QID+ +PLKR + LK     +   + + YE+LS+FCY CG++GH IKEC   E       G     G W ++      +   ++    S
Subjt:  PEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKEC--EEQVEAGGRGPFGGRGRWQQSNFDVGVEAETEAHKQPS

Query:  EEPELTQIHRSPPATAE-SLPTVS----EMSKVTSGISVMEKGLKKETSI-------------KEVDGILGKGGEKIDDTEIQGITVNKCADSGIPKIYT
           +   +  S     E SL TV+       K    +S  +K   +ETS              K V  I G  GEK+  T+    T+         +I  
Subjt:  EEPELTQIHRSPPATAE-SLPTVS----EMSKVTSGISVMEKGLKKETSI-------------KEVDGILGKGGEKIDDTEIQGITVNKCADSGIPKIYT

Query:  NGHLPSNSQMDIDLKSQVAEGVRLDKINQ---VDMVTKKDGPE-NGLICKERVKAK
              + Q+   L S + + + + KI +         K GP+  G ICKE+   K
Subjt:  NGHLPSNSQMDIDLKSQVAEGVRLDKINQ---VDMVTKKDGPE-NGLICKERVKAK

XP_021713609.1 uncharacterized protein LOC110681792 [Chenopodium quinoa]1.8e-1733.96Show/hide
Query:  QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSED----------------MEFRASAEAIGSLLGKVEKVDIRDESDP-EWGRSLRIKIQ
        ++N++  QF     K  +LE   WF+D+ +LL +E    +Y E+                M+   +  +I  +    E +++ DESDP  W  S+RIK+ 
Subjt:  QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSED----------------MEFRASAEAIGSLLGKVEKVDIRDESDP-EWGRSLRIKIQ

Query:  IDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVEAGGRGP
        +D+ +PL+RG+FL +  +   +WI + YE+L+DFC+ CGRL HT KEC+ + +A G  P
Subjt:  IDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVEAGGRGP

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.5e-1635.33Show/hide
Query:  NIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEFR------------------ASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQI
        NI+   F     K  +L  G W ++K++L+   P       DM F                     A  +G+ LG VE+++  D +D   G  +R++++I
Subjt:  NIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEFR------------------ASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQI

Query:  DVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQ
        DV +PL+RGI LK+ S G+D W P+ YEKL DFCY CG++GH+ +ECE++
Subjt:  DVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQ

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]4.3e-1636.23Show/hide
Query:  LEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGS
        LE G W + K +++  +       E+M+F                  +A+ EAIG  +G    +D+ DE D   GR LRIK+++D+++PL RG+ +  G 
Subjt:  LEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGS

Query:  KGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVEAG
        + +  W P+ YE L DFCY CG +GHT K CE +VE G
Subjt:  KGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVEAG

TrEMBL top hitse value%identityAlignment
A0A5C7GV62 CCHC-type domain-containing protein2.1e-1626.4Show/hide
Query:  FSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESD
        F + +TE + D  NI+   F+    + WI + G W+++K ++  E+P G      + F                  R  A+ +   +G+V  +DI  ES 
Subjt:  FSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF------------------RASAEAIGSLLGKVEKVDIRDESD

Query:  PEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKEC--EEQVEAGGRGPFGGRGRWQQSNFDVGVEAETEAHKQPS
          WGR +R+K+QID+ +PLKR + LK     +   + + YE+LS+FCY CG++GH IKEC   E       G     G W ++      +   ++    S
Subjt:  PEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKEC--EEQVEAGGRGPFGGRGRWQQSNFDVGVEAETEAHKQPS

Query:  EEPELTQIHRSPPATAE-SLPTVS----EMSKVTSGISVMEKGLKKETSI-------------KEVDGILGKGGEKIDDTEIQGITVNKCADSGIPKIYT
           +   +  S     E SL TV+       K    +S  +K   +ETS              K V  I G  GEK+  T+    T+         +I  
Subjt:  EEPELTQIHRSPPATAE-SLPTVS----EMSKVTSGISVMEKGLKKETSI-------------KEVDGILGKGGEKIDDTEIQGITVNKCADSGIPKIYT

Query:  NGHLPSNSQMDIDLKSQVAEGVRLDKINQ---VDMVTKKDGPE-NGLICKERVKAK
              + Q+   L S + + + + KI +         K GP+  G ICKE+   K
Subjt:  NGHLPSNSQMDIDLKSQVAEGVRLDKINQ---VDMVTKKDGPE-NGLICKERVKAK

A0A6J1D765 uncharacterized protein LOC1110179027.2e-1735.33Show/hide
Query:  NIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEFR------------------ASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQI
        NI+   F     K  +L  G W ++K++L+   P       DM F                     A  +G+ LG VE+++  D +D   G  +R++++I
Subjt:  NIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEFR------------------ASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQI

Query:  DVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQ
        DV +PL+RGI LK+ S G+D W P+ YEKL DFCY CG++GH+ +ECE++
Subjt:  DVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQ

A0A7N2MS75 CCHC-type domain-containing protein3.6e-1629.21Show/hide
Query:  AAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTD-QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF---------
        AA++ G    + K     ++ I  L    ++ +   K+ ++ + +  ++  +F   R K  ILEM  W Y+K+++L +E +G    +D+           
Subjt:  AAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTD-QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF---------

Query:  ---------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRG--IFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVE
                 R +   IG+ LG+V  VD+  ES   WG+ LR+++ +DV + L RG  I ++    GE +WI   YE+L +FCY CG L H +K+C+E+  
Subjt:  ---------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRG--IFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVE

Query:  AG
        +G
Subjt:  AG

A0A7N2QWW0 CCHC-type domain-containing protein4.7e-1629.21Show/hide
Query:  AAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTD-QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF---------
        AA++ G    + K     ++ I  L    ++ +   K+ ++ + +  ++  +F   R K  ILEM  W Y+K+++L +E +G    +D+           
Subjt:  AAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTD-QSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEF---------

Query:  ---------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRG--IFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVE
                 R +   IG+ LG+V  VD+  ES   WG+ LR+++ +DV + L RG  I ++    GE +WI   YE+L +FCY CG L H +K+C+E+  
Subjt:  ---------RASAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRG--IFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVE

Query:  AG
        +G
Subjt:  AG

A0A7N2R0C3 Reverse transcriptase domain-containing protein4.7e-1628.64Show/hide
Query:  VRLTVEVGGRCA---VVRRRSYCIGAAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLL
        +R  VE G +C    V+ R+   + A +     + +WK N    L + G                      ++  +F   R K  +++M  W Y+K ++L
Subjt:  VRLTVEVGGRCA---VVRRRSYCIGAAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLL

Query:  FEEPKGG----------------IYSEDMEFRA--SAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKL
        F+E +G                 IY+  ++ R   + +AIG  +GK  +VD+ +E+  +WG  LR++++IDV R L RG  +    KGE +W+   YE+L
Subjt:  FEEPKGG----------------IYSEDMEFRA--SAEAIGSLLGKVEKVDIRDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKL

Query:  SDFCYGCGRLGHTIKECEEQ
         +FCY CG L H +K+C E+
Subjt:  SDFCYGCGRLGHTIKECEEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGGTAGGGTCAGACAAATCTACACAGAAGCCTAACCGTCAAGCAAGCAAACAGCACAGAGAAGCTGGTCGGCCTCATGCCAAGGCCGAGGCCGACCATCCACC
TTCAAAAGGCCAGCCCTGGATCTGGAATGAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGTGCTCGGCCTCTTCCCGAGGCCGAGGCCGACCAGAGAGGCCCCTC
CAGCCACCTTTGTAATTTTGGACCACACAGATGCACAAGGAGCTGACAAGGACAATCGGGCAGAGGTAGGACTAGAAAACCGACCCAGAGAAAGATCGGATCAAAGGGTC
GGGCCAACATGGCCCGACCCATATGGTCGGCCTCGGCCCGACCATCTGGCCCGGGTGGACACCCCCCTTTCGGTCCCAGATGCCCCGAATCGCCCCGGTTTTGCCCGATT
CGTCCTGAAACACCTCCGAATTCCTAAAAACCCTAGGAGGACGAGCATCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTGCAGCGATTTTGGCTGGTCTTGCAGGT
CACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGCTAACGGTGGAAGTGGGCGGTCGGTGTGCTGTTGTTAGGCGGCGTTCCTACTGTATT
GGAGCAGCTCAGTCTGCTGGTGGAAGACAGTCCATATGGAAGAAGAATTATCTCAACAACTTGCGGATCTGCGGGTTACTCCTGAGGAGAAAGCTTGCATTTTCCAGCTT
CAAGACAGAGAAATTGACCGATCAGAGCAACATCTGGCGAACTCAATTCTCTATTGCTAGAATAAAGGGATGGATATTGGAAATGGGACTGTGGTTCTACGACAAAGCGA
TGTTATTGTTCGAGGAACCAAAAGGGGGAATCTACAGCGAGGACATGGAGTTCAGGGCATCTGCAGAAGCGATTGGTAGCTTGCTTGGAAAGGTTGAAAAAGTAGACATT
CGGGACGAATCAGATCCAGAGTGGGGCAGATCGTTGAGAATCAAAATTCAGATTGATGTTCAGAGACCCTTGAAACGAGGAATTTTCTTGAAATCAGGGAGTAAAGGGGA
GGACAAATGGATTCCTATTACGTACGAGAAGCTATCAGATTTCTGCTATGGATGCGGTCGATTGGGACATACTATCAAAGAGTGTGAAGAGCAGGTAGAGGCAGGGGGAA
GGGGACCGTTTGGTGGGCGAGGAAGGTGGCAACAAAGTAACTTTGATGTGGGAGTGGAAGCAGAAACTGAAGCACACAAGCAACCGTCGGAGGAGCCCGAGTTGACTCAA
ATCCACCGTTCACCGCCTGCCACGGCTGAATCTCTCCCGACGGTTTCTGAGATGAGCAAGGTAACGAGTGGAATTTCAGTTATGGAAAAAGGACTAAAAAAGGAAACTTC
AATAAAGGAGGTTGACGGAATCTTAGGCAAGGGAGGGGAGAAGATTGATGACACCGAAATCCAAGGAATAACGGTGAATAAATGCGCTGATAGTGGGATTCCTAAGATTT
ACACAAATGGCCATTTGCCTTCCAACTCACAAATGGATATTGATTTAAAATCACAGGTGGCAGAGGGGGTACGTTTGGATAAAATTAATCAGGTGGATATGGTGACCAAA
AAGGATGGGCCTGAGAATGGGCTTATTTGTAAAGAAAGGGTCAAGGCCAAAGGGTGGAAAAGAATAAATAGGGACAACAAATCAGAAAGCCACAATGTTATGAAGCCTTC
GAATATTCAGCCGGTGGGTGGAGTTAAACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGGTAGGGTCAGACAAATCTACACAGAAGCCTAACCGTCAAGCAAGCAAACAGCACAGAGAAGCTGGTCGGCCTCATGCCAAGGCCGAGGCCGACCATCCACC
TTCAAAAGGCCAGCCCTGGATCTGGAATGAAGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGTGCTCGGCCTCTTCCCGAGGCCGAGGCCGACCAGAGAGGCCCCTC
CAGCCACCTTTGTAATTTTGGACCACACAGATGCACAAGGAGCTGACAAGGACAATCGGGCAGAGGTAGGACTAGAAAACCGACCCAGAGAAAGATCGGATCAAAGGGTC
GGGCCAACATGGCCCGACCCATATGGTCGGCCTCGGCCCGACCATCTGGCCCGGGTGGACACCCCCCTTTCGGTCCCAGATGCCCCGAATCGCCCCGGTTTTGCCCGATT
CGTCCTGAAACACCTCCGAATTCCTAAAAACCCTAGGAGGACGAGCATCATCGGAGGCGGTGTGGCCTACACCACACCGGTGTGCAGCGATTTTGGCTGGTCTTGCAGGT
CACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGCTAACGGTGGAAGTGGGCGGTCGGTGTGCTGTTGTTAGGCGGCGTTCCTACTGTATT
GGAGCAGCTCAGTCTGCTGGTGGAAGACAGTCCATATGGAAGAAGAATTATCTCAACAACTTGCGGATCTGCGGGTTACTCCTGAGGAGAAAGCTTGCATTTTCCAGCTT
CAAGACAGAGAAATTGACCGATCAGAGCAACATCTGGCGAACTCAATTCTCTATTGCTAGAATAAAGGGATGGATATTGGAAATGGGACTGTGGTTCTACGACAAAGCGA
TGTTATTGTTCGAGGAACCAAAAGGGGGAATCTACAGCGAGGACATGGAGTTCAGGGCATCTGCAGAAGCGATTGGTAGCTTGCTTGGAAAGGTTGAAAAAGTAGACATT
CGGGACGAATCAGATCCAGAGTGGGGCAGATCGTTGAGAATCAAAATTCAGATTGATGTTCAGAGACCCTTGAAACGAGGAATTTTCTTGAAATCAGGGAGTAAAGGGGA
GGACAAATGGATTCCTATTACGTACGAGAAGCTATCAGATTTCTGCTATGGATGCGGTCGATTGGGACATACTATCAAAGAGTGTGAAGAGCAGGTAGAGGCAGGGGGAA
GGGGACCGTTTGGTGGGCGAGGAAGGTGGCAACAAAGTAACTTTGATGTGGGAGTGGAAGCAGAAACTGAAGCACACAAGCAACCGTCGGAGGAGCCCGAGTTGACTCAA
ATCCACCGTTCACCGCCTGCCACGGCTGAATCTCTCCCGACGGTTTCTGAGATGAGCAAGGTAACGAGTGGAATTTCAGTTATGGAAAAAGGACTAAAAAAGGAAACTTC
AATAAAGGAGGTTGACGGAATCTTAGGCAAGGGAGGGGAGAAGATTGATGACACCGAAATCCAAGGAATAACGGTGAATAAATGCGCTGATAGTGGGATTCCTAAGATTT
ACACAAATGGCCATTTGCCTTCCAACTCACAAATGGATATTGATTTAAAATCACAGGTGGCAGAGGGGGTACGTTTGGATAAAATTAATCAGGTGGATATGGTGACCAAA
AAGGATGGGCCTGAGAATGGGCTTATTTGTAAAGAAAGGGTCAAGGCCAAAGGGTGGAAAAGAATAAATAGGGACAACAAATCAGAAAGCCACAATGTTATGAAGCCTTC
GAATATTCAGCCGGTGGGTGGAGTTAAACATTAA
Protein sequenceShow/hide protein sequence
MLKVGSDKSTQKPNRQASKQHREAGRPHAKAEADHPPSKGQPWIWNEALRMTKYGGLAVLGLFPRPRPTREAPPATFVILDHTDAQGADKDNRAEVGLENRPRERSDQRV
GPTWPDPYGRPRPDHLARVDTPLSVPDAPNRPGFARFVLKHLRIPKNPRRTSIIGGGVAYTTPVCSDFGWSCRSRLPQFLQIHCWCHVKVRLTVEVGGRCAVVRRRSYCI
GAAQSAGGRQSIWKKNYLNNLRICGLLLRRKLAFSSFKTEKLTDQSNIWRTQFSIARIKGWILEMGLWFYDKAMLLFEEPKGGIYSEDMEFRASAEAIGSLLGKVEKVDI
RDESDPEWGRSLRIKIQIDVQRPLKRGIFLKSGSKGEDKWIPITYEKLSDFCYGCGRLGHTIKECEEQVEAGGRGPFGGRGRWQQSNFDVGVEAETEAHKQPSEEPELTQ
IHRSPPATAESLPTVSEMSKVTSGISVMEKGLKKETSIKEVDGILGKGGEKIDDTEIQGITVNKCADSGIPKIYTNGHLPSNSQMDIDLKSQVAEGVRLDKINQVDMVTK
KDGPENGLICKERVKAKGWKRINRDNKSESHNVMKPSNIQPVGGVKH