; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028918 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028918
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:15507947..15516242
RNA-Seq ExpressionSpg028918
SyntenySpg028918
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.5e-0876.47Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.5e-0876.47Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.5e-0876.47Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.5e-0876.47Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.5e-0876.47Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

TrEMBL top hitse value%identityAlignment
A0A5A7TV22 Ty3-gypsy retrotransposon protein1.1e-0664.29Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESSAPSLS
        +SVMMAD+  +  M EMERK NLLMK VDERDHEI  L+ Q+Q RE AESS   LS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESSAPSLS

A0A5A7TYE9 Ty3-gypsy retrotransposon protein1.5e-0664.71Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMAD+  +  MAEMERK+N LMK V+ERDHEI  L+ Q++ RE AESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

A0A5A7VCV9 Retrotransposon gag protein8.8e-0763.46Show/hide
Query:  MSVMMADVDQDE-RMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVM+ DVD+ E RMAE+E+K+N+LMK V+ERD+EIA+LKN +++R+ AESS
Subjt:  MSVMMADVDQDE-RMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

A0A5D3C3J8 Ty3-gypsy retrotransposon protein6.7e-0764.71Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVMMAD+  +  MAEMERK+N LM  V+ERDHEI  L+ Q+Q REP ESS
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

A0A5D3D4X3 Ty3-gypsy retrotransposon protein8.8e-0763.46Show/hide
Query:  MSVMMADVDQDE-RMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS
        MSVM+ DVD+ E RMAE+E+K+N+LMK V+ERD+EIA+LKN +++R+ AESS
Subjt:  MSVMMADVDQDE-RMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCGGAGATGGAAAGAAAACTTAATCTCCTAATGAAGACAGTTGATGAAAGAGATCATGAGATTGCCTA
TTTGAAGAACCAGCTACAAAATCGAGAACCGGCTGAGTCATCAGCCCCCTCTTTGTCGTTCAGCCGTGAGTCCCATCACCCAGCCGTCGCGTCGCCACGTCGTGTCGCTG
CCGTCGAAGTCTGGGTCACACCGCTACCGTCTTCGCGCGAGCTCCCTTCTTCCCCTCGTGTGTTTTGCGTGGAACCCAGTTCTACCATTTGTGTCGCCTTCAGGTTGCAG
CGCCGTCACCCTCTAGCTGCACCAGTTTGGAGCCCTGTCTTTCACGTTTTTGCCTCTGTTCAGCAGCGTTTTCGGGTGTTGTTGGTGTCGTTTGACGTTTTTGCGCCGTC
TAAGTGTTCGGATACACTCCAACTCGAATACCCACTGCCCAAGGATCGTTCTAGCGCATCGTTAGAGGTAAGTAGTTTCTACTTACTAAGCTTGTTTGAGTGCCTGAAGG
ATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATATTGATACAAACGTAATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTA
TCCTGTGCAATGAGTCCATTAGGTCCCACCGGTAGCTCCATTGGGGCGTTGAGGGAAAAGGCGAAACACATCAAGAACGTCATACAAAGTTTGGTCGATGAGCGGGACCT
TGGTGATGAGGAGGAGAGCTACGAGGAAGATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCGGAGATGGAAAGAAAACTTAATCTCCTAATGAAGACAGTTGATGAAAGAGATCATGAGATTGCCTA
TTTGAAGAACCAGCTACAAAATCGAGAACCGGCTGAGTCATCAGCCCCCTCTTTGTCGTTCAGCCGTGAGTCCCATCACCCAGCCGTCGCGTCGCCACGTCGTGTCGCTG
CCGTCGAAGTCTGGGTCACACCGCTACCGTCTTCGCGCGAGCTCCCTTCTTCCCCTCGTGTGTTTTGCGTGGAACCCAGTTCTACCATTTGTGTCGCCTTCAGGTTGCAG
CGCCGTCACCCTCTAGCTGCACCAGTTTGGAGCCCTGTCTTTCACGTTTTTGCCTCTGTTCAGCAGCGTTTTCGGGTGTTGTTGGTGTCGTTTGACGTTTTTGCGCCGTC
TAAGTGTTCGGATACACTCCAACTCGAATACCCACTGCCCAAGGATCGTTCTAGCGCATCGTTAGAGGTAAGTAGTTTCTACTTACTAAGCTTGTTTGAGTGCCTGAAGG
ATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATATTGATACAAACGTAATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTA
TCCTGTGCAATGAGTCCATTAGGTCCCACCGGTAGCTCCATTGGGGCGTTGAGGGAAAAGGCGAAACACATCAAGAACGTCATACAAAGTTTGGTCGATGAGCGGGACCT
TGGTGATGAGGAGGAGAGCTACGAGGAAGATGCTTAG
Protein sequenceShow/hide protein sequence
MSVMMADVDQDERMAEMERKLNLLMKTVDERDHEIAYLKNQLQNREPAESSAPSLSFSRESHHPAVASPRRVAAVEVWVTPLPSSRELPSSPRVFCVEPSSTICVAFRLQ
RRHPLAAPVWSPVFHVFASVQQRFRVLLVSFDVFAPSKCSDTLQLEYPLPKDRSSASLEVSSFYLLSLFECLKDKAGYLILVTLWIRPALYIDTNVMIQRVHVVDMRVGV
SCAMSPLGPTGSSIGALREKAKHIKNVIQSLVDERDLGDEEESYEEDA