CuGenDBv2

Gene ID	Spg028921
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold5:15965427..15972154
RNA-Seq Expression	Spg028921
Synteny	Spg028921
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.3e-51

47.87

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Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + +PK +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL     R F LS  +D  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.1e-51

47.87

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + +PK +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL +   R F LS  +D  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.7e-50

48.34

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKIQKKL  W Y  ISKGGR TLI STLS+LP Y LSVF  P   CKNIEK  RNFLW G + S+G  L+ W  V   K++GGL I R+  TNKALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+  E  A+W+  I  KY+  + G IP     S+S++ W +I    D F  N  WD++NG  IS W+ +W+I G L  A  R F LS  +D+ V D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
        AW++   +W +
Subjt:  AWSSTLCRWDL

TYK05764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.4e-53

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Query:  ITLCHQDKLPIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFR
        I+ C  D   I EK+ KKL  W Y+ +SKG + TLI+STLS+LP Y LSVF    SI K+IEK  RNFLW+ ++ +Q   LV+W  V +PK +GGL I R
Subjt:  ITLCHQDKLPIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFR

Query:  IKDTNKALLKKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVL
        IKDTN ALL KWLWRF HED  +WK FIA KYES   G IP  S +SSSRS W ++ +  D F     W + N  N S WH  W  + PL +   R F L
Subjt:  IKDTNKALLKKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVL

Query:  SYKQDMLVSDAWSSTLCRWD
        S KQ+  +SD W+S    WD
Subjt:  SYKQDMLVSDAWSSTLCRWD

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

3.8e-49

46.45

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + + K +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL     R + LS  ++  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein

2.6e-51

47.87

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + +PK +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL     R F LS  +D  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

1.5e-51

47.87

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + +PK +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL +   R F LS  +D  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein

3.7e-50

48.34

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKIQKKL  W Y  ISKGGR TLI STLS+LP Y LSVF  P   CKNIEK  RNFLW G + S+G  L+ W  V   K++GGL I R+  TNKALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+  E  A+W+  I  KY+  + G IP     S+S++ W +I    D F  N  WD++NG  IS W+ +W+I G L  A  R F LS  +D+ V D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
        AW++   +W +
Subjt:  AWSSTLCRWDL

A0A5D3C384 LINE-1 retrotransposable element ORF2 protein

3.6e-53

Show/hide

Query:  ITLCHQDKLPIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFR
        I+ C  D   I EK+ KKL  W Y+ +SKG + TLI+STLS+LP Y LSVF    SI K+IEK  RNFLW+ ++ +Q   LV+W  V +PK +GGL I R
Subjt:  ITLCHQDKLPIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFR

Query:  IKDTNKALLKKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVL
        IKDTN ALL KWLWRF HED  +WK FIA KYES   G IP  S +SSSRS W ++ +  D F     W + N  N S WH  W  + PL +   R F L
Subjt:  IKDTNKALLKKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVL

Query:  SYKQDMLVSDAWSSTLCRWD
        S KQ+  +SD W+S    WD
Subjt:  SYKQDMLVSDAWSSTLCRWD

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

1.9e-49

46.45

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Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        + EKI KKL  W Y+ +SKGG+ TLI S+L++LP Y LS+F  PVS CKNIEK  RNFLW     +    LV W  + + K +GGL I R+KDTN ALL 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD
        KWLWR+ HED+ +WK  I  KY S   G IP     SSSRS W++I K  + F  +  W + NG + S WH  W  + PL     R + LS  ++  + D
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQDMLVSD

Query:  AWSSTLCRWDL
         W++TL  WDL
Subjt:  AWSSTLCRWDL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.1e-21

32.97

Show/hide

Query:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK
        I+E++  ++  W    +S  GR TL  + LS++P + +S    P SI   +++  R FLW  T   +   LVKW  V +PK +GGL +   K  N+AL+ 
Subjt:  IMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALLK

Query:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKF----SSSRSLWWAIS-KLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPL
        K  WR   E N++W   +  KY   H G I R S++     S  S W +I+  L+D+      W   +G  I  W D W    PL
Subjt:  KWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKF----SSSRSLWWAIS-KLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPL

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.7e-18

29.28

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Query:  PIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALL
        P++EKI+ ++ KW   ++S  GR  LI S + +L N+ +S F  P +  K I+    +FLW G + +     V W  V  PK +GGL I  +K+ NK   
Subjt:  PIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQGGLCIFRIKDTNKALL

Query:  KKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPL
                                   F SI   +   S   +W  I K + +     + D+HNG N S W D+W+  G L
Subjt:  KKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATTGTGTCACCAGGATAAGCTACCTATCATGGAGAAAATTCAGAAGAAGTTGGAGAA
ATGGTGTTATACTTACATTTCTAAGGGTGGGAGAACTACTCTAATTCACTCTACCCTTAGCAATTTGCCCAACTACATGCTTTCAGTCTTTAACACTCCTGTCTCCATTT
GCAAGAATATTGAAAAAGCCATTCGTAACTTCCTCTGGCATGGAACAGACTTTTCTCAAGGAAATATTTTGGTTAAGTGGGATTTTGTGGCTGCTCCAAAGTCTCAAGGT
GGTCTCTGCATTTTTAGAATCAAAGACACCAATAAAGCTTTACTCAAGAAATGGTTATGGAGGTTCTGTCATGAAGACAACGCTGTTTGGAAAAACTTCATAGCAGATAA
ATATGAGAGTCCTCACTTTGGCTCCATTCCTAGAACTTCTAAATTCTCAAGTTCTCGATCTCTGTGGTGGGCAATATCAAAGCTTAAAGATATTTTTCTTTTGAATACCA
GATGGGATGTCCATAATGGCTGTAACATTAGCTTATGGCATGATTCTTGGACAATCCATGGTCCTTTGAAGATGGCAGCCAACCGAAAATTTGTGTTATCTTACAAGCAA
GATATGCTAGTTTCTGATGCTTGGTCCTCCACCCTTTGTCGTTGGGATCTGATAAAGCTCGTGGCTCTCTATCTCTATGTGGGAGAATATCTTGTCATTGATAGAGCTTT
GGAGTCCAAGGCCTTGAAAAAAGAAGAATTGGGCCGAATATTGAAGGAACCAGCCCAAAATCAGCCAAAACGCGAATCTGGAAGTCTCGACGCTTGGGCAGCAAGTCAAT
TACGTCACAGCGTCGCGACGCTGTCGCTCTTGGAGCACTATTTAAAGCGCGGATTGGTCTCGAGTCATTCAGACAATAATCTTGCTGAATTGGGCGAGGAGAAAGGAGAT
AAAATTAAAGATGATGAGGCTACTCTGCTGGAAAGAGGCAAAGTTGCATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVALDHCICIEYKVGRITLCHQDKLPIMEKIQKKLEKWCYTYISKGGRTTLIHSTLSNLPNYMLSVFNTPVSICKNIEKAIRNFLWHGTDFSQGNILVKWDFVAAPKSQG
GLCIFRIKDTNKALLKKWLWRFCHEDNAVWKNFIADKYESPHFGSIPRTSKFSSSRSLWWAISKLKDIFLLNTRWDVHNGCNISLWHDSWTIHGPLKMAANRKFVLSYKQ
DMLVSDAWSSTLCRWDLIKLVALYLYVGEYLVIDRALESKALKKEELGRILKEPAQNQPKRESGSLDAWAASQLRHSVATLSLLEHYLKRGLVSSHSDNNLAELGEEKGD
KIKDDEATLLERGKVA

Spg028921 (gene) of Sponge gourd (cylindrica) v1 genome