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Spg028934 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028934
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:15421041..15439066
RNA-Seq ExpressionSpg028934
SyntenySpg028934
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7140119.1 hypothetical protein RHSIM_Rhsim06G0115000 [Rhododendron simsii]5.8e-0937.76Show/hide
Query:  DEELYNSECGERFEVEDGKKQY--IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQV
        ++E  ++   E F+VE  K+ Y  ++       LW  T   PILPP +++  GRP+KQR+++PDEP   +K+ +  + + C KCG+  HN R+CKG V
Subjt:  DEELYNSECGERFEVEDGKKQY--IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQV

XP_014499554.1 uncharacterized protein LOC106760657 [Vigna radiata var. radiata]4.4e-0944.76Show/hide
Query:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQVKEKPLTSKLPDYAMLGRIIRTSRGLFSNLVAERSK
        LWP +E EP+LPP  KK  GRPKK R+R+ DE  S +K+SKK   MKCS C    HN+RSCK     K  T      A  GR    S G   +  A R  
Subjt:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQVKEKPLTSKLPDYAMLGRIIRTSRGLFSNLVAERSK

Query:  SRTYG
        S + G
Subjt:  SRTYG

XP_022156713.1 uncharacterized protein LOC111023558 [Momordica charantia]2.3e-1355.42Show/hide
Query:  VDIEVIEETPLAIEEAPKSLKLVDICDISDNNVHIEELLNIDYDGDDNENQDAHEGGGASLNFENDGVSLNLEDEELYNSECG
        +D+EVI ETP+AI+E   SL+L DIC  SD  +HIEELLN+DYDG+D++     +  G  LN  + GV L+LE+EEL NSECG
Subjt:  VDIEVIEETPLAIEEAPKSLKLVDICDISDNNVHIEELLNIDYDGDDNENQDAHEGGGASLNFENDGVSLNLEDEELYNSECG

XP_027935024.1 uncharacterized protein LOC114190371 [Vigna unguiculata]7.5e-0947.5Show/hide
Query:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSC--------KGQVKEKPLTS
        LWP T+   ILPP+ K   GRP+K R+R+PDE  S +++ KK+  MKCS CG+  HNIRSC        K + K+KP T+
Subjt:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSC--------KGQVKEKPLTS

XP_028112221.1 uncharacterized protein LOC114310445 [Camellia sinensis]4.0e-1051.47Show/hide
Query:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQVKEK
        LWP T  +P+LPP +K+ +GRP K R RDPDEP +  K+ ++ S +KCSKCG   HN R+CK  +K K
Subjt:  LWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQVKEK

TrEMBL top hitse value%identityAlignment
A0A2N9ES33 Uncharacterized protein4.3e-1039.13Show/hide
Query:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS
        +  N E+ + Y  +C   ++V   KK Y   I+ +N    +W  T + P+ PP +++  GRPKK+R R+PDEP + TK+ +  +  KC KCG+  HN RS
Subjt:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS

Query:  CKGQVKEKPLTSKLP
        CKG+V      SKLP
Subjt:  CKGQVKEKPLTSKLP

A0A2N9GPL9 Uncharacterized protein5.6e-1037.5Show/hide
Query:  VSLNLEDEELYNSECGERFEVEDGKKQYIVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKG
        +  N E+ + Y  +C +    +   ++ I+ +N  + +W  T + P+ PP +++  GRPKK R R+PDEP + TK+ +  +  KC KCGK  HN RSCKG
Subjt:  VSLNLEDEELYNSECGERFEVEDGKKQYIVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKG

Query:  QVKEKPLTSKLP
        +V      SKLP
Subjt:  QVKEKPLTSKLP

A0A2N9H0G1 Uncharacterized protein9.6e-1039.13Show/hide
Query:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS
        +  N E+ + Y  +C   ++V   KK Y   I+ +N    +W  T + P+ PP +++  GRPKK R R+PDEP + TK+ +  +  KC KCG+  HN RS
Subjt:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS

Query:  CKGQVKEKPLTSKLP
        CKG+V      SKLP
Subjt:  CKGQVKEKPLTSKLP

A0A2N9IJT2 Uncharacterized protein9.6e-1039.13Show/hide
Query:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS
        +  N E+ + Y  +C   ++V   KK Y   I+ +N    +W  T + P+ PP +++  GRPKK R R+PDEP + TK+ +  +  KC KCG+  HN RS
Subjt:  VSLNLEDEELYNSECGERFEVEDGKKQY---IVDLNTHAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRS

Query:  CKGQVKEKPLTSKLP
        CKG+V      SKLP
Subjt:  CKGQVKEKPLTSKLP

A0A6J1DRD2 uncharacterized protein LOC1110235581.1e-1355.42Show/hide
Query:  VDIEVIEETPLAIEEAPKSLKLVDICDISDNNVHIEELLNIDYDGDDNENQDAHEGGGASLNFENDGVSLNLEDEELYNSECG
        +D+EVI ETP+AI+E   SL+L DIC  SD  +HIEELLN+DYDG+D++     +  G  LN  + GV L+LE+EEL NSECG
Subjt:  VDIEVIEETPLAIEEAPKSLKLVDICDISDNNVHIEELLNIDYDGDDNENQDAHEGGGASLNFENDGVSLNLEDEELYNSECG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTCTTCTTCGGATACAAATATATTGTGGATATTGAAGTAATTGAGGAGACACCTCTAGCCATAGAAGAGGCACCTAAGAGCTTAAAATTAGTTGACATTTGTGA
TATTAGTGACAACAATGTGCACATTGAAGAATTACTAAATATTGATTATGATGGAGATGATAATGAGAACCAAGATGCACATGAGGGTGGTGGTGCAAGTTTGAACTTCG
AGAATGATGGTGTGAGTTTGAACTTAGAAGATGAAGAATTATATAATTCTGAATGTGGCGAGAGATTTGAGGTAGAGGATGGGAAGAAGCAATACATAGTGGATCTCAAT
ACACACGCATATCTTTGGCCTAATACTGAGATGGAACCTATACTTCCTCCCTTGATAAAAAAATTACTTGGGAGACCAAAGAAACAACGAAAACGAGATCCTGATGAGCC
ATCTAGTTCCACTAAAGTTAGCAAGAAATATAGTGTTATGAAGTGCAGCAAGTGTGGAAAAGATGTCCACAATATTAGATCTTGCAAAGGCCAAGTCAAAGAAAAACCAT
TAACTTCTAAACTTCCGGATTATGCAATGCTTGGAAGGATAATCCGCACAAGTAGAGGATTATTTTCCAACTTAGTTGCCGAGAGGTCCAAGTCCAGGACATATGGTTCT
ACTTTCGGGGAACGAAAGACATCTCAACCTGAGTCAAAATGGCATTGCAAGCTCCATCAGCAGCAGCAAGTAACAGGATTATCAATGTCTCAATTTTCTTTGCAAGATAT
GCATCTTCAATTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCAAAAAAGGCTGCAAATATTATTCCAATTGTGAAGGAGGTCTCTATGAAATGTGTTG
CCAATTCATTATATTCTTTTGACATTTTGATTGGAAATACACACTTGCGTTGGATCTCGCGTCCTAGCAACTGGAAGCCTCAGTTCCGTGCGATTTTTCCTTTGTCCAGC
GGTGTTTTGGCTCCGTTTTGGATCGTTACGACGTCGCTTATCGTTTCCGTGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAACTTGATCACCCACTACCCAAGGA
TCATTCTAACGCATTGTTAGAGCTGAAAAGCCTTAACTATGGCCATTCAGCAAGTACCCATTGCCCGTTGAGCTTTCTTGGACTACCTTGGGTTGTTGAAGTTGCTATAG
AAGCACCTTATAGGTGTTGTAAAAATTTTGGTTTAGTCCTACGTATGTCGTTATGGTGCCGAAATTTTCGGTGCAATCGGCCCAAGACCAACCCAAAAGCCGAGAACATG
GAAGTCCAAAAGGAGGGGTGGCGTCGAGACACCACCCTCGGCGTCAAGACGCTGAGACGACTTGGAGAACACGAAGACTACGTCACGGCGTCGAGATGCTGTGACGTTAG
CGTCTCGACGCTAGACAGGCTAGAGCACTATTTAAAGGGACCCTTGGCCTCGGTTTTCAATCATCAAGCAATCATTGGGAGCATTTTACAAAGGCTCCTAGAGCCTCTTA
GAGGGAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTCTTCTTCGGATACAAATATATTGTGGATATTGAAGTAATTGAGGAGACACCTCTAGCCATAGAAGAGGCACCTAAGAGCTTAAAATTAGTTGACATTTGTGA
TATTAGTGACAACAATGTGCACATTGAAGAATTACTAAATATTGATTATGATGGAGATGATAATGAGAACCAAGATGCACATGAGGGTGGTGGTGCAAGTTTGAACTTCG
AGAATGATGGTGTGAGTTTGAACTTAGAAGATGAAGAATTATATAATTCTGAATGTGGCGAGAGATTTGAGGTAGAGGATGGGAAGAAGCAATACATAGTGGATCTCAAT
ACACACGCATATCTTTGGCCTAATACTGAGATGGAACCTATACTTCCTCCCTTGATAAAAAAATTACTTGGGAGACCAAAGAAACAACGAAAACGAGATCCTGATGAGCC
ATCTAGTTCCACTAAAGTTAGCAAGAAATATAGTGTTATGAAGTGCAGCAAGTGTGGAAAAGATGTCCACAATATTAGATCTTGCAAAGGCCAAGTCAAAGAAAAACCAT
TAACTTCTAAACTTCCGGATTATGCAATGCTTGGAAGGATAATCCGCACAAGTAGAGGATTATTTTCCAACTTAGTTGCCGAGAGGTCCAAGTCCAGGACATATGGTTCT
ACTTTCGGGGAACGAAAGACATCTCAACCTGAGTCAAAATGGCATTGCAAGCTCCATCAGCAGCAGCAAGTAACAGGATTATCAATGTCTCAATTTTCTTTGCAAGATAT
GCATCTTCAATTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCAAAAAAGGCTGCAAATATTATTCCAATTGTGAAGGAGGTCTCTATGAAATGTGTTG
CCAATTCATTATATTCTTTTGACATTTTGATTGGAAATACACACTTGCGTTGGATCTCGCGTCCTAGCAACTGGAAGCCTCAGTTCCGTGCGATTTTTCCTTTGTCCAGC
GGTGTTTTGGCTCCGTTTTGGATCGTTACGACGTCGCTTATCGTTTCCGTGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAACTTGATCACCCACTACCCAAGGA
TCATTCTAACGCATTGTTAGAGCTGAAAAGCCTTAACTATGGCCATTCAGCAAGTACCCATTGCCCGTTGAGCTTTCTTGGACTACCTTGGGTTGTTGAAGTTGCTATAG
AAGCACCTTATAGGTGTTGTAAAAATTTTGGTTTAGTCCTACGTATGTCGTTATGGTGCCGAAATTTTCGGTGCAATCGGCCCAAGACCAACCCAAAAGCCGAGAACATG
GAAGTCCAAAAGGAGGGGTGGCGTCGAGACACCACCCTCGGCGTCAAGACGCTGAGACGACTTGGAGAACACGAAGACTACGTCACGGCGTCGAGATGCTGTGACGTTAG
CGTCTCGACGCTAGACAGGCTAGAGCACTATTTAAAGGGACCCTTGGCCTCGGTTTTCAATCATCAAGCAATCATTGGGAGCATTTTACAAAGGCTCCTAGAGCCTCTTA
GAGGGAGGGATTGA
Protein sequenceShow/hide protein sequence
MFVFFGYKYIVDIEVIEETPLAIEEAPKSLKLVDICDISDNNVHIEELLNIDYDGDDNENQDAHEGGGASLNFENDGVSLNLEDEELYNSECGERFEVEDGKKQYIVDLN
THAYLWPNTEMEPILPPLIKKLLGRPKKQRKRDPDEPSSSTKVSKKYSVMKCSKCGKDVHNIRSCKGQVKEKPLTSKLPDYAMLGRIIRTSRGLFSNLVAERSKSRTYGS
TFGERKTSQPESKWHCKLHQQQQVTGLSMSQFSLQDMHLQLKETKAMFEKEREAAKKAANIIPIVKEVSMKCVANSLYSFDILIGNTHLRWISRPSNWKPQFRAIFPLSS
GVLAPFWIVTTSLIVSVPSKCSIEFETLQLDHPLPKDHSNALLELKSLNYGHSASTHCPLSFLGLPWVVEVAIEAPYRCCKNFGLVLRMSLWCRNFRCNRPKTNPKAENM
EVQKEGWRRDTTLGVKTLRRLGEHEDYVTASRCCDVSVSTLDRLEHYLKGPLASVFNHQAIIGSILQRLLEPLRGRD