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Spg028955 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028955
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:15858984..15864109
RNA-Seq ExpressionSpg028955
SyntenySpg028955
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]2.5e-1562.5Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGLSY EGTKRP+GNR SLQT +L KT                 VEIELPVPDTLPTSAES RS+S+TW+ELY ES+H+
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]9.2e-1871.83Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLN
        LF LSY EGTKRPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ESVH+  +  + N
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLN

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1456.25Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAH
        LFGL Y EGTKRPRGNR+SLQT +L KT                 VEIELPVPDTLPTSAESS S+SSTW+EL  E VH V +  Y    V    H
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAH

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.1e-1347.5Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNV
        L GLSY EGT RPRGNR SLQT KL KT                            VEIELP+PDTLPT AES  S+SSTW+ELY ESVH V +  YL  
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNV

Query:  NVAEDAHFSKKLACVPQPSL
         V    H    ++  P  SL
Subjt:  NVAEDAHFSKKLACVPQPSL

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]6.2e-1447.41Show/hide
Query:  LSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAHFSKKLACVPQPSL-ASLQISHTSG
        +S  E  + PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESVH V +  Y    V  + H         Q SL  ++ +  TS 
Subjt:  LSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAHFSKKLACVPQPSL-ASLQISHTSG

Query:  -----QSSFQLSSYEL
             Q +F LS++ +
Subjt:  -----QSSFQLSSYEL

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein4.5e-1871.83Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLN
        LF LSY EGTKRPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SSTW+ELY ESVH+  +  + N
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLN

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.9e-1556.25Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAH
        LFGL Y EGTKRPRGNR+SLQT +L KT                 VEIELPVPDTLPTSAESS S+SSTW+EL  E VH V +  Y    V    H
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAH

A0A5A7UGD0 Uncharacterized protein5.1e-1447.5Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNV
        L GLSY EGT RPRGNR SLQT KL KT                            VEIELP+PDTLPT AES  S+SSTW+ELY ESVH V +  YL  
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT----------------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNV

Query:  NVAEDAHFSKKLACVPQPSL
         V    H    ++  P  SL
Subjt:  NVAEDAHFSKKLACVPQPSL

A0A5A7V2F2 Uncharacterized protein3.0e-1447.41Show/hide
Query:  LSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAHFSKKLACVPQPSL-ASLQISHTSG
        +S  E  + PRGNR SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESVH V +  Y    V  + H         Q SL  ++ +  TS 
Subjt:  LSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAHFSKKLACVPQPSL-ASLQISHTSG

Query:  -----QSSFQLSSYEL
             Q +F LS++ +
Subjt:  -----QSSFQLSSYEL

A0A5D3DIM8 Uncharacterized protein1.2e-1562.5Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGLSY EGTKRP+GNR SLQT +L KT                 VEIELPVPDTLPTSAES RS+S+TW+ELY ES+H+
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGAT
CGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGA
TCTATCTCAATGTTAATGTGGCTGAGGATGCTCACTTCTCCAAGAAATTGGCTTGCGTGCCCCAACCTTCTCTTGCCAGCTTGCAAATTAGTCACACGTCAGGGCAATCA
TCTTTCCAGCTGTCATCGTACGAATTATACTCTGGGATCTGCGCCTGTGCTGAAGATAACTTGGACAAGGAAATATCTATAGAATTCATGCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGAT
CGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGA
TCTATCTCAATGTTAATGTGGCTGAGGATGCTCACTTCTCCAAGAAATTGGCTTGCGTGCCCCAACCTTCTCTTGCCAGCTTGCAAATTAGTCACACGTCAGGGCAATCA
TCTTTCCAGCTGTCATCGTACGAATTATACTCTGGGATCTGCGCCTGTGCTGAAGATAACTTGGACAAGGAAATATCTATAGAATTCATGCGTTAG
Protein sequenceShow/hide protein sequence
MPTSGFLFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLIYLNVNVAEDAHFSKKLACVPQPSLASLQISHTSGQS
SFQLSSYELYSGICACAEDNLDKEISIEFMR