; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028967 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028967
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:14280378..14282498
RNA-Seq ExpressionSpg028967
SyntenySpg028967
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]2.2e-4048.13Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP
        A +E  +   T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP

Query:  VHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA
        +HI R+ K KV D+NHITV EVD  +EKE   QR S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+M   +E+ T      TRPSA
Subjt:  VHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA

Query:  FQRLNMPIGEEEST
        F+RL++   ++  T
Subjt:  FQRLNMPIGEEEST

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.5e-3845Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRG
        A R+  +   T    K EASTS  K  ++ +E  SN PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KGLGYKSPEP+ ITR+G
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRG

Query:  KAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNMP
        K KV D+NHITV+EVD  + KE   QRTS F RI P VARA VF+RLS+ E + +  Q                         STSN+ R SAFQRL + 
Subjt:  KAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNMP

Query:  IGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH
          EE+     S  T+PS F+RLS+T +++ +   A  I+H
Subjt:  IGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]2.2e-4045.34Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSS
              KKLL+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++ 
Subjt:  ------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSS

Query:  TRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM
         R S F+RL++   EE+    TS  T+PSAF+RL++
Subjt:  TRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-4030.53Show/hide
Query:  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEA
        ++E T   S  K   IE+++EGWT+V RRKK+K +  +KES L+ + +R   +++ K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E 
Subjt:  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEA

Query:  LETVT-----------------CHVVDVVEDD--------------------------------------------------------------------
           V                  C  +D  ++D                                                                    
Subjt:  LETVT-----------------CHVVDVVEDD--------------------------------------------------------------------

Query:  -------------------DVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK--
                           +VP  +     + ++ A RE  +   T    K EASTS  K  +V DEK SN PILRYVPLSRRKKGESPF E  + +K  
Subjt:  -------------------DVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK--

Query:  ---------------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV
                                                                                   KKLL+EG+++P +RKGLGYK PEP+
Subjt:  ---------------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV

Query:  HITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEEST
         ITR+GK KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ E E +  Q T+S  R S F+RL+M    E+ +
Subjt:  HITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEEST

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]2.4e-3943.5Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETE
                        KKLL+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E
Subjt:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETE

Query:  EESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM
         +  Q T++  + S F+RL++   EE+    TS  T+PSAF+RL++
Subjt:  EESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.0e-4048.13Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP
        A +E  +   T   +KGEASTS  K  ++ DEK SN  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPTTRKGLGYKSPEP

Query:  VHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA
        +HI R+ K KV D+NHITV EVD  +EKE   QR S F +IRP V R  VF+RLSV +TE +  Q T+S  + S  +RL+M   +E+ T      TRPSA
Subjt:  VHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSA

Query:  FQRLNMPIGEEEST
        F+RL++   ++  T
Subjt:  FQRLNMPIGEEEST

A0A5A7UMY2 Reverse transcriptase domain-containing protein1.0e-4045.34Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSS
              KKLL+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E + +  Q T++ 
Subjt:  ------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSS

Query:  TRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM
         R S F+RL++   EE+    TS  T+PSAF+RL++
Subjt:  TRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.4e-4030.53Show/hide
Query:  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEA
        ++E T   S  K   IE+++EGWT+V RRKK+K +  +KES L+ + +R   +++ K KKK+R+ K V E+ +DF    + +TLA++FP RFL D Q E 
Subjt:  QKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEA

Query:  LETVT-----------------CHVVDVVEDD--------------------------------------------------------------------
           V                  C  +D  ++D                                                                    
Subjt:  LETVT-----------------CHVVDVVEDD--------------------------------------------------------------------

Query:  -------------------DVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK--
                           +VP  +     + ++ A RE  +   T    K EASTS  K  +V DEK SN PILRYVPLSRRKKGESPF E  + +K  
Subjt:  -------------------DVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK--

Query:  ---------------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV
                                                                                   KKLL+EG+++P +RKGLGYK PEP+
Subjt:  ---------------------------------------------------------------------------KKLLKEGYSLPTTRKGLGYKSPEPV

Query:  HITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEEST
         ITR+GK KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ E E +  Q T+S  R S F+RL+M    E+ +
Subjt:  HITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEEST

A0A5D3C8N8 Ribonuclease H1.7e-3845Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRG
        A R+  +   T    K EASTS  K  ++ +E  SN PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KGLGYKSPEP+ ITR+G
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PTTRKGLGYKSPEPVHITRRG

Query:  KAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNMP
        K KV D+NHITV+EVD  + KE   QRTS F RI P VARA VF+RLS+ E + +  Q                         STSN+ R SAFQRL + 
Subjt:  KAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNMP

Query:  IGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH
          EE+     S  T+PS F+RLS+T +++ +   A  I+H
Subjt:  IGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISH

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.2e-3943.5Show/hide
Query:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------
        A +E  +   T    K EAST+  K  ++ DEK SN PILRYVPLSRRKKGESPF E  + +K                                     
Subjt:  ARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------

Query:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETE
                        KKLL+EG+ +P +RKGLGYKSPEP+ ITR+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E
Subjt:  ----------------KKLLKEGYSLPTTRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETE

Query:  EESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM
         +  Q T++  + S F+RL++   EE+    TS  T+PSAF+RL++
Subjt:  EESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRPSAFQRLNM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCAATTCGGGACCCTTGATCCCGTAGTGGTTCGATGCCAAAAGGAAGCCACAATGAGGGGATCCCATGGAAAATATGATTCCATTGAGGATGAGAACGAAGGCTG
GACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTGTGCACGGAAAGAGTCCCACCTATTTCGAGATAGTAAAAGAAAAGTTATGTCTGAAAGGAAGAAAGGAAAAA
AGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCGAGGCGTTTTCTCGATGATAGT
CAAGGAGAGGCGCTCGAAACTGTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCGAAGCCACAAGCAGATGCAAG
AAGGGAAGTTGTTGAAGATGCCAGTACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTA
TCCTACGATACGTCCCCTTGTCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACA
ACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCACATAACAAGAAGAGGGAAAGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTC
AAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCCTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAG
AAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTTCGAATGTCACTCGACCT
TCAGCTTTTCAGAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAG
AGACAAAAGAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATGAAAAATGAAAAGACCACGAAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCAATTCGGGACCCTTGATCCCGTAGTGGTTCGATGCCAAAAGGAAGCCACAATGAGGGGATCCCATGGAAAATATGATTCCATTGAGGATGAGAACGAAGGCTG
GACCCTTGTCGTGCGTCGCAAAAAGCAAAAGCAAAGTTGTGCACGGAAAGAGTCCCACCTATTTCGAGATAGTAAAAGAAAAGTTATGTCTGAAAGGAAGAAAGGAAAAA
AGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGAATACTTCCCGAGGCGTTTTCTCGATGATAGT
CAAGGAGAGGCGCTCGAAACTGTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCGAAGCCACAAGCAGATGCAAG
AAGGGAAGTTGTTGAAGATGCCAGTACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTA
TCCTACGATACGTCCCCTTGTCTCGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACA
ACAAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCACATAACAAGAAGAGGGAAAGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTC
AAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCCTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAG
AAAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGAGAGTACATTTTCAACTTCGAATGTCACTCGACCT
TCAGCTTTTCAGAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTCGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAG
AGACAAAAGAGAACAGTCTGCTTCATCGATATCTCACCGACTTCAATATGAAGATGCGATGAAAAATGAAAAGACCACGAAG
Protein sequenceShow/hide protein sequence
MIQFGTLDPVVVRCQKEATMRGSHGKYDSIEDENEGWTLVVRRKKQKQSCARKESHLFRDSKRKVMSERKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDS
QGEALETVTCHVVDVVEDDDVPASSSGTMAKPQADARREVVEDASTSDLKKGEASTSLVKPKVVKDEKCSNSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPT
TRKGLGYKSPEPVHITRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIGEEESTFSTSNVTRP
SAFQRLNMPIGEEESTFSTSDVTRPSVFQRLSVTTRRDKREQSASSISHRLQYEDAMKNEKTTK