; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028970 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028970
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold5:17286147..17290744
RNA-Seq ExpressionSpg028970
SyntenySpg028970
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]1.3e-1246.43Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE
        HH V S IP PS+P+LPKN G N GGK+IRL E       +   EH + S SS  D HWKRP KK KV          S++ V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + ESLT P+
Subjt:  EQRNKESLTSPN

KAA0042070.1 hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa]6.3e-1552.34Show/hide
Query:  IHHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVD---NSFDESPLKDPLEGVEEQRNKE
        IHH V S IP PS+PKLPKN G N GGK+IRL E   +   +  +EH + + SS  D HWKRP KK KVSS + D   +S   SPL   LEG+ E  N E
Subjt:  IHHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVD---NSFDESPLKDPLEGVEEQRNKE

Query:  SLTSPNV
        SLT P+V
Subjt:  SLTSPNV

KAA0048379.1 hypothetical protein E6C27_scaffold264G00980 [Cucumis melo var. makuwa]5.9e-1348.21Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSS----------MNVDNSFDESPLKDPLEGVE
        HH V SAIP PS+P+LPKN G N GGK+IRL E  T    +   EH + S SS  D HWKR  KK KVSS          + V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSS----------MNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + ESLT P+
Subjt:  EQRNKESLTSPN

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]3.8e-1245.54Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE
        HH V S IPSPS+P+LPKN G N GGK+IRL E       +   EH + S +S  D HWKRP KK KV          S++ V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + +SLT P+
Subjt:  EQRNKESLTSPN

TYK16513.1 hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa]3.5e-1348.67Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVDNSF----------DESPLKDPLEGVE
        HH + SAIP PS+PKLPKN G N GGKKIRL E  T    +   EH + S SS  D HWKRP KK KVS  N D               SPL + LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVDNSF----------DESPLKDPLEGVE

Query:  EQRNKESLTSPNV
        E  + E LT P+V
Subjt:  EQRNKESLTSPNV

TrEMBL top hitse value%identityAlignment
A0A5A7SQC9 PMD domain-containing protein6.4e-1346.43Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE
        HH V S IP PS+P+LPKN G N GGK+IRL E       +   EH + S SS  D HWKRP KK KV          S++ V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + ESLT P+
Subjt:  EQRNKESLTSPN

A0A5A7U4K9 Uncharacterized protein2.9e-1348.21Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSS----------MNVDNSFDESPLKDPLEGVE
        HH V SAIP PS+P+LPKN G N GGK+IRL E  T    +   EH + S SS  D HWKR  KK KVSS          + V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSS----------MNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + ESLT P+
Subjt:  EQRNKESLTSPN

A0A5A7U8L3 PMD domain-containing protein1.9e-1245.54Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE
        HH V S IPSPS+P+LPKN G N GGK+IRL E       +   EH + S +S  D HWKRP KK KV          S++ V +    SPL D LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKV----------SSMNVDNSFDESPLKDPLEGVE

Query:  EQRNKESLTSPN
        E  + +SLT P+
Subjt:  EQRNKESLTSPN

A0A5D3CXA5 Uncharacterized protein1.7e-1348.67Show/hide
Query:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVDNSF----------DESPLKDPLEGVE
        HH + SAIP PS+PKLPKN G N GGKKIRL E  T    +   EH + S SS  D HWKRP KK KVS  N D               SPL + LEG+ 
Subjt:  HHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVDNSF----------DESPLKDPLEGVE

Query:  EQRNKESLTSPNV
        E  + E LT P+V
Subjt:  EQRNKESLTSPNV

A0A5D3D2A0 PMD domain-containing protein3.1e-1552.34Show/hide
Query:  IHHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVD---NSFDESPLKDPLEGVEEQRNKE
        IHH V S IP PS+PKLPKN G N GGK+IRL E   +   +  +EH + + SS  D HWKRP KK KVSS + D   +S   SPL   LEG+ E  N E
Subjt:  IHHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSHDHHWKRPPKKTKVSSMNVD---NSFDESPLKDPLEGVEEQRNKE

Query:  SLTSPNV
        SLT P+V
Subjt:  SLTSPNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATAGCGTCTCGACGCTGTCGACAGATTTTCTATAAATTCAACACTTTCTTGCACGGCCAAGGGGAGTCCAATTTGGAACAATCGTGTCCAATTGCTCTCATTGC
ACAACTGATATTTGTTTGCCAACCAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGTGGGCAGTGCCATTCCTTCTCCATCTCGTCCCAAATTACCCAAAA
ATAATGGGGGTAATCACGGAGGAAAGAAGATTCGTTTGCCCGAGGATGACACTTCTGCTCCTATACAAAATGCTTCAGAGCATGGTGAAACAAGTTGCAGCAGCTCTCAC
GACCATCATTGGAAGAGACCACCCAAGAAAACAAAGGTGTCTTCCATGAATGTAGACAACTCTTTTGATGAGTCACCCCTGAAAGATCCCCTTGAAGGTGTGGAGGAGCA
ACGCAACAAGGAATCATTAACAAGTCCAAATGTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATAGCGTCTCGACGCTGTCGACAGATTTTCTATAAATTCAACACTTTCTTGCACGGCCAAGGGGAGTCCAATTTGGAACAATCGTGTCCAATTGCTCTCATTGC
ACAACTGATATTTGTTTGCCAACCAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGTGGGCAGTGCCATTCCTTCTCCATCTCGTCCCAAATTACCCAAAA
ATAATGGGGGTAATCACGGAGGAAAGAAGATTCGTTTGCCCGAGGATGACACTTCTGCTCCTATACAAAATGCTTCAGAGCATGGTGAAACAAGTTGCAGCAGCTCTCAC
GACCATCATTGGAAGAGACCACCCAAGAAAACAAAGGTGTCTTCCATGAATGTAGACAACTCTTTTGATGAGTCACCCCTGAAAGATCCCCTTGAAGGTGTGGAGGAGCA
ACGCAACAAGGAATCATTAACAAGTCCAAATGTGTTTTGA
Protein sequenceShow/hide protein sequence
MSIASRRCRQIFYKFNTFLHGQGESNLEQSCPIALIAQLIFVCQPVLNSFTVAFIHHPVGSAIPSPSRPKLPKNNGGNHGGKKIRLPEDDTSAPIQNASEHGETSCSSSH
DHHWKRPPKKTKVSSMNVDNSFDESPLKDPLEGVEEQRNKESLTSPNVF