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Spg028978 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028978
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold5:16693403..16698038
RNA-Seq ExpressionSpg028978
SyntenySpg028978
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]9.3e-1462.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D  HITV+E+  +EE KEG   RTSAFDRI P V R+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]1.2e-1362.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D+ HITV+E+ D  EGKEG   RTSAFDRI P V R+ VF+RLS T  + K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

KAA0056394.1 uncharacterized protein E6C27_scaffold186G001420 [Cucumis melo var. makuwa]2.7e-1362.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ IT KGKEKV D  HITV+E+  +EE KEG   RTSAFDRI P VTR+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

TYK20897.1 uncharacterized protein E5676_scaffold284G00330 [Cucumis melo var. makuwa]5.4e-1461.84Show/hide
Query:  QYKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        +YKSPEP+ ITRKGKEKV D+ HITV+E+  +EE KEG   RTSAFDRI P V R+ VF+RLS T  E K    TS
Subjt:  QYKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]2.1e-1361.33Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D+ HITV+E+  +EE KEG + RTS FDRI P V R+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H4.5e-1462.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D  HITV+E+  +EE KEG   RTSAFDRI P V R+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

A0A5A7UMH1 Uncharacterized protein1.3e-1362.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ IT KGKEKV D  HITV+E+  +EE KEG   RTSAFDRI P VTR+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

A0A5D3C8N8 Ribonuclease H5.9e-1462.67Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D+ HITV+E+ D  EGKEG   RTSAFDRI P V R+ VF+RLS T  + K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

A0A5D3DB95 RNase H domain-containing protein2.6e-1461.84Show/hide
Query:  QYKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        +YKSPEP+ ITRKGKEKV D+ HITV+E+  +EE KEG   RTSAFDRI P V R+ VF+RLS T  E K    TS
Subjt:  QYKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.0e-1361.33Show/hide
Query:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS
        YKSPEP+ ITRKGKEKV D+ HITV+E+  +EE KEG + RTS FDRI P V R+ VF+RLS T  E K    TS
Subjt:  YKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGACCCAATTTGGTGTTGTGCAGGAAAACAGAGGAAAGCTGGAAATTACCCAGAAATGCGACCGCATTTCAGGGAAGGCCAATTTCAAATGCGACTGCATTTC
TGGAAAAACAGAGGTCGTTTCGAGTCCGTCGCAGAAAAACAGAGGAGAACTGGAAATTCCCAGAAATGCAAATCGCATTTCTGGGAAGGCTAAATTGAAATGCGACTGCA
TTTCTGGGTGGACAGAGGCAGTTCCGAGTCCGTCGCGGGTCATTTTGAACGAGAGTTTCACGCACCTAACCGTGTATACTTGCACTAGGTTGGCTGAATTTATCTTAATC
ACTATTTACCATCTTTTCTCACATCCATCATCCGGCCCAACACCGCATCAATATAAATCTCCTGAGCCGGTTTGGATCACAAGAAAAGGGAAAGAAAAAGTTGCAGATAC
GCTTCACATTACGGTGGAAGAAATTGGTGATATCGAAGAAGGTAAAGAAGGCATAGATCACAGGACTTCTGCCTTTGATCGCATTGGGCCGTCTGTTACACGATCTTCGG
TTTTTCAAAGGCTAAGTACAACTGCATTAGAAGGCAAAATTCAGCATCCAACTTCTGCTGCACACGACCTTCGACTTTCCAAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGACCCAATTTGGTGTTGTGCAGGAAAACAGAGGAAAGCTGGAAATTACCCAGAAATGCGACCGCATTTCAGGGAAGGCCAATTTCAAATGCGACTGCATTTC
TGGAAAAACAGAGGTCGTTTCGAGTCCGTCGCAGAAAAACAGAGGAGAACTGGAAATTCCCAGAAATGCAAATCGCATTTCTGGGAAGGCTAAATTGAAATGCGACTGCA
TTTCTGGGTGGACAGAGGCAGTTCCGAGTCCGTCGCGGGTCATTTTGAACGAGAGTTTCACGCACCTAACCGTGTATACTTGCACTAGGTTGGCTGAATTTATCTTAATC
ACTATTTACCATCTTTTCTCACATCCATCATCCGGCCCAACACCGCATCAATATAAATCTCCTGAGCCGGTTTGGATCACAAGAAAAGGGAAAGAAAAAGTTGCAGATAC
GCTTCACATTACGGTGGAAGAAATTGGTGATATCGAAGAAGGTAAAGAAGGCATAGATCACAGGACTTCTGCCTTTGATCGCATTGGGCCGTCTGTTACACGATCTTCGG
TTTTTCAAAGGCTAAGTACAACTGCATTAGAAGGCAAAATTCAGCATCCAACTTCTGCTGCACACGACCTTCGACTTTCCAAAGGCTAA
Protein sequenceShow/hide protein sequence
MNLTQFGVVQENRGKLEITQKCDRISGKANFKCDCISGKTEVVSSPSQKNRGELEIPRNANRISGKAKLKCDCISGWTEAVPSPSRVILNESFTHLTVYTCTRLAEFILI
TIYHLFSHPSSGPTPHQYKSPEPVWITRKGKEKVADTLHITVEEIGDIEEGKEGIDHRTSAFDRIGPSVTRSSVFQRLSTTALEGKIQHPTSAAHDLRLSKG