; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg028996 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg028996
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:15367343..15371348
RNA-Seq ExpressionSpg028996
SyntenySpg028996
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.0e-1539.13Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           +  R   KR+   D  +G      D    +  P  KFEKYT T VP EQVLMEI+N  LLK+  RM ++  
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFH DHGH T+                                 +K P REIRTI GGP    S RKRK   REAR
Subjt:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.2e-1841.3Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           D  R   KR+   D  +G      D    +  P  KFEKYTPT VP EQVLMEI++  LLK+  RMK++  
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFHRDHGH T+                                 +K P REIRTI GGP    S RKRKA  REAR
Subjt:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]5.5e-1740.74Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQKYMSAEE    K+   E KR    DQ R++   + +            D   G+     KFEKYTPT VP EQVLMEI++  LLK+   MK+ P 
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLT----------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPK
         R K +YCLFHRDHGH T                                   NK P REIRTI GG     S RKRKA  REAR  P+
Subjt:  SRDKSQYCLFHRDHGHLT----------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]4.2e-1740.76Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           D  R   KR+   D  +G      D    +  P  KFEKYTPT VP EQVLMEI++  LLK+  RMK    
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTRN---------------------------------KEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFHRDH H T++                                 K P REIRTI GGP    S+RKRKA  REAR
Subjt:  SRDKSQYCLFHRDHGHLTRN---------------------------------KEPPREIRTIFGGPAGGGSSRKRKAIAREAR

XP_030924856.1 uncharacterized protein LOC115951865 [Quercus lobata]9.2e-1242.98Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAH-PFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNP
        L +A KYM+AE+ L +    RE K      ++R++D RQ   D GR  A      D+ R+  P G+F  +TP   P +QVLM+I+N G L FLG++K +P
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAH-PFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNP

Query:  GSRDKSQYCLFHRDHGHLTRN
          R + +YC FHRDHGH T N
Subjt:  GSRDKSQYCLFHRDHGHLTRN

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.9e-1539.13Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           +  R   KR+   D  +G      D    +  P  KFEKYT T VP EQVLMEI+N  LLK+  RM ++  
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFH DHGH T+                                 +K P REIRTI GGP    S RKRK   REAR
Subjt:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR

A0A6J1DDR5 uncharacterized protein LOC1110201159.9e-1231.55Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKR--HSLVDQDRKKDKRQWIDDSGRGRADHD----HDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGR
        LQKA+K +  +EL++ K +GR  K+       +D++K   +  D      +  D     D    R+ P   +E+YTPT +P  ++L  I  + + K L R
Subjt:  LQKAQKYMSAEELLKSKRSGREHKR--HSLVDQDRKKDKRQWIDDSGRGRADHD----HDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGR

Query:  ---MKSNPGSRDKSQYCLFHRDHGHLT--------------------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIA
           ++ +P  R+K +YCLFHRDHGH T                                            R K+ P  I TIFGGP+GG S  KRK +A
Subjt:  ---MKSNPGSRDKSQYCLFHRDHGHLT--------------------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIA

Query:  REARFE
        REAR E
Subjt:  REARFE

A0A6J1DWY0 uncharacterized protein LOC1110252931.1e-1841.3Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           D  R   KR+   D  +G      D    +  P  KFEKYTPT VP EQVLMEI++  LLK+  RMK++  
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFHRDHGH T+                                 +K P REIRTI GGP    S RKRKA  REAR
Subjt:  SRDKSQYCLFHRDHGHLTR---------------------------------NKEPPREIRTIFGGPAGGGSSRKRKAIAREAR

A0A6J1DYL6 uncharacterized protein LOC1110257852.1e-1740.76Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQ+YMSA E   SKR           D  R   KR+   D  +G      D    +  P  KFEKYTPT VP EQVLMEI++  LLK+  RMK    
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLTRN---------------------------------KEPPREIRTIFGGPAGGGSSRKRKAIAREAR
         R K +YCLFHRDH H T++                                 K P REIRTI GGP    S+RKRKA  REAR
Subjt:  SRDKSQYCLFHRDHGHLTRN---------------------------------KEPPREIRTIFGGPAGGGSSRKRKAIAREAR

A0A6J1DZ52 uncharacterized protein LOC1110256122.7e-1740.74Show/hide
Query:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG
        L +AQKYMSAEE    K+   E KR    DQ R++   + +            D   G+     KFEKYTPT VP EQVLMEI++  LLK+   MK+ P 
Subjt:  LQKAQKYMSAEELLKSKRSGREHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPG

Query:  SRDKSQYCLFHRDHGHLT----------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPK
         R K +YCLFHRDHGH T                                   NK P REIRTI GG     S RKRKA  REAR  P+
Subjt:  SRDKSQYCLFHRDHGHLT----------------------------------RNKEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACCGCCACCAGCGGATGTCACGAGAAGAAGGCCGAGATCGACCTCGGACTGAATCTCCTCTCTCCACCGCCCTTATCCCGAGAGAAGCAAGCTGATCTCAAAAT
TGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCATATTTTGGATAAACTGGGTCCTAGCACTAAAACCCATGATGAGAGGTTGATTA
GGGATCCGAGGAAGGGGAAGGAGCCTATGGAGCACACCGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAACATGACCAGAAAGGTCAGGGGGCTCAAACCT
ATAGATCGTACAATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGACGTGACCACACAGTTTCTTCACCAAGCTACAGTCACACGAAGACAGACCTGAGGAATCTGAT
CGAGGAGAAGCGTAGAAGTGCCAAAACTACCGAGTCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTACCGAGGCCGAGGCCAAGAAGGACAATCTCCCTTGGAAAA
CTGAGCTTCTGAACACACTAAAGGAGCTCGAAAATCCTCAAGGGGACCTGCAAAAGGCACAAAAGTATATGAGCGCAGAGGAATTACTGAAATCAAAGAGGTCAGGACGA
GAGCACAAGAGACATTCTTTAGTCGATCAAGACAGAAAGAAAGATAAGAGACAATGGATAGATGATAGTGGTCGAGGCCGAGCCGACCATGACCATGACCATGACCAAGG
CCGTGCACATCCCTTTGGTAAGTTCGAGAAATATACACCAACGGTTGTTCCACAGGAGCAAGTTCTGATGGAGATTCGAAATACGGGACTCCTGAAATTCCTGGGGAGAA
TGAAGTCGAATCCCGGTAGCAGAGACAAGAGCCAGTATTGCCTTTTCCACCGAGATCATGGGCATTTAACCAGAAATAAAGAACCCCCACGAGAGATAAGAACCATCTTT
GGAGGACCAGCTGGAGGAGGATCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAAAATATCGAGCGCTAAAACAAGTTAAGCCGCTGAGGGCTGA
GGCCGACCAGAGGACGAGCCGAGGCCGAGCAGGGCACACTTCCACCAACTCTGAATCTGAACTTATGGACCCCATTGTTTCACCATTGAAGTTCAGTATTCAGAAGTGTC
CACAAGGCAACCGATTCAAGCATCACGTTACGCGAGCCTGGACCACCGAGTCTACCTCGCCTCATCCATACTTGAGACTATGTGAGCCTGAACCACGGGTCTACCTCACA
AGCCATCACATTACGCGAGCCTGGACTACCAAGTCTACCTCGCCTCATCCAGACTTGAGATCATGTGAGCCTGGACCACGAGTCTACCTTACCTCATCTGGCTTGAGCCC
ATCACTTCTTGCGAGCCTGGGCTATCGAGTCTACCTCGCCTCATTCAGATTCGAGATTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACCGCCACCAGCGGATGTCACGAGAAGAAGGCCGAGATCGACCTCGGACTGAATCTCCTCTCTCCACCGCCCTTATCCCGAGAGAAGCAAGCTGATCTCAAAAT
TGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCATATTTTGGATAAACTGGGTCCTAGCACTAAAACCCATGATGAGAGGTTGATTA
GGGATCCGAGGAAGGGGAAGGAGCCTATGGAGCACACCGCAGAATCAGGGACGAGATCGAAGGGAAAGAAGACTGACAACATGACCAGAAAGGTCAGGGGGCTCAAACCT
ATAGATCGTACAATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGACGTGACCACACAGTTTCTTCACCAAGCTACAGTCACACGAAGACAGACCTGAGGAATCTGAT
CGAGGAGAAGCGTAGAAGTGCCAAAACTACCGAGTCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTACCGAGGCCGAGGCCAAGAAGGACAATCTCCCTTGGAAAA
CTGAGCTTCTGAACACACTAAAGGAGCTCGAAAATCCTCAAGGGGACCTGCAAAAGGCACAAAAGTATATGAGCGCAGAGGAATTACTGAAATCAAAGAGGTCAGGACGA
GAGCACAAGAGACATTCTTTAGTCGATCAAGACAGAAAGAAAGATAAGAGACAATGGATAGATGATAGTGGTCGAGGCCGAGCCGACCATGACCATGACCATGACCAAGG
CCGTGCACATCCCTTTGGTAAGTTCGAGAAATATACACCAACGGTTGTTCCACAGGAGCAAGTTCTGATGGAGATTCGAAATACGGGACTCCTGAAATTCCTGGGGAGAA
TGAAGTCGAATCCCGGTAGCAGAGACAAGAGCCAGTATTGCCTTTTCCACCGAGATCATGGGCATTTAACCAGAAATAAAGAACCCCCACGAGAGATAAGAACCATCTTT
GGAGGACCAGCTGGAGGAGGATCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAAAATATCGAGCGCTAAAACAAGTTAAGCCGCTGAGGGCTGA
GGCCGACCAGAGGACGAGCCGAGGCCGAGCAGGGCACACTTCCACCAACTCTGAATCTGAACTTATGGACCCCATTGTTTCACCATTGAAGTTCAGTATTCAGAAGTGTC
CACAAGGCAACCGATTCAAGCATCACGTTACGCGAGCCTGGACCACCGAGTCTACCTCGCCTCATCCATACTTGAGACTATGTGAGCCTGAACCACGGGTCTACCTCACA
AGCCATCACATTACGCGAGCCTGGACTACCAAGTCTACCTCGCCTCATCCAGACTTGAGATCATGTGAGCCTGGACCACGAGTCTACCTTACCTCATCTGGCTTGAGCCC
ATCACTTCTTGCGAGCCTGGGCTATCGAGTCTACCTCGCCTCATTCAGATTCGAGATTATGTGA
Protein sequenceShow/hide protein sequence
MVTATSGCHEKKAEIDLGLNLLSPPPLSREKQADLKIAALENKVSAMDHNLSRILHILDKLGPSTKTHDERLIRDPRKGKEPMEHTAESGTRSKGKKTDNMTRKVRGLKP
IDRTILRSPESSTLKGRDHTVSSPSYSHTKTDLRNLIEEKRRSAKTTESEARAAEAEARATEAEAKKDNLPWKTELLNTLKELENPQGDLQKAQKYMSAEELLKSKRSGR
EHKRHSLVDQDRKKDKRQWIDDSGRGRADHDHDHDQGRAHPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFLGRMKSNPGSRDKSQYCLFHRDHGHLTRNKEPPREIRTIF
GGPAGGGSSRKRKAIAREARFEPKYRALKQVKPLRAEADQRTSRGRAGHTSTNSESELMDPIVSPLKFSIQKCPQGNRFKHHVTRAWTTESTSPHPYLRLCEPEPRVYLT
SHHITRAWTTKSTSPHPDLRSCEPGPRVYLTSSGLSPSLLASLGYRVYLASFRFEIM